PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676710066
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family bHLH
Protein Properties Length: 443aa    MW: 50008.8 Da    PI: 5.4235
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676710066genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.53.3e-10231278254
                HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
        HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                +++    Er RR ++N+++e L+ l+P++      K + a+iL   ++YI++L
  676710066 231 KKKPFTTERDRRCHLNERYEALKLLIPSP-----SKGDRASILLDGIDYINEL 278
                5566788*********************9.....79**************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.107.4E-11227287IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.26E-12228296IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.554229278IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.1E-8231278IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.3E-8235284IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.47E-10238283No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0048658Biological Processanther wall tapetum development
GO:0052543Biological Processcallose deposition in cell wall
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    Send to blast
MYEENSCFDH NPRVESLINS NGGYCESTTA AEADFPVSHQ FQPPLMVTGS TTNSFNDDLK  60
LPPMEEFSVF PSVVSFPNSE TNYQISNDDN NNNSHMIQQM IHESNWVASV DNSGFFMNTS  120
NQNTTTTPIP DLLSLLHLPS CSMPLPNSNL SDIMSGSCFT YDPLFHLNLP PQPPLIHTAN  180
DYSGFLLGID NNTTTQTDEL NIGDENSNAQ FDSGIIEFSK KIRRKGRGKK KKKPFTTERD  240
RRCHLNERYE ALKLLIPSPS KGDRASILLD GIDYINELRR RVSELKYLVE RKRCGGRHKN  300
NNEVDNNNNN SDDHNNVDDE NIEKKPESDV IDQCSSNNSL RCSWLQRKSK VTEVDVRIVD  360
DEVTIKVVQK KKINCLLVVS KVLDQLHLDL HHVAGGQIGE HYSFLLNTKI NEGSTIYASA  420
IANRVIEVVD QHYMAALPIN INY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1219233KKIRRKGRGKKKKKP
Cis-element ? help Back to Top
SourceLink
PlantRegMap676710066
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018481763.10.0PREDICTED: transcription factor bHLH91-like
SwissprotQ8GX460.0BH091_ARATH; Transcription factor bHLH91
TrEMBLV4LMD20.0V4LMD2_EUTSA; Uncharacterized protein
STRINGXP_006410252.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13552696
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31210.10.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Cui J, et al.
    Feedback Regulation of DYT1 by Interactions with Downstream bHLH Factors Promotes DYT1 Nuclear Localization and Anther Development.
    Plant Cell, 2016. 28(5): p. 1078-93
    [PMID:27113773]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]