PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676709794
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family NAC
Protein Properties Length: 941aa    MW: 107300 Da    PI: 5.6508
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676709794genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM68.12.5e-2171375128
        NAM   5 frFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpk..kvkaeekewyfFskrdkkya....tgkrknr.atksgyWkatgkdkevlskk 96 
                 rF+Pt  elv + L++++++kk +   +i+++ ++y+ ePw L++  +v+  e+ew++F++r+k++      +k ++r +  sg+Wk+tg  +++++k 
  676709794   7 RRFNPTKVELV-NILRQRIDKKKPSS--FITDIqNLYEKEPWLLQHvsHVRFYENEWFYFVTRKKRAGiikaDSKIPSRkVGGSGRWKTTGALTHIKNKY 103
                69*********.88******999766..7888889*********94346666889*******999987665445566664677***************** PP

        NAM  97 gelvglkktLvfy..kgrapkgektdWvmheyrl 128
                g ++g  k++ f   ++++++g+ + Wvmhe+ l
  676709794 104 GVKIGSMKSICFKvkSETKQDGTTSGWVMHEFVL 137
                ************96556889999*********87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100528.4733153IPR003441NAC domain
PfamPF023657.5E-127137IPR003441NAC domain
SuperFamilySSF1019412.48E-237152IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 941 aa     Download sequence    Send to blast
MSLKVTRRFN PTKVELVNIL RQRIDKKKPS SFITDIQNLY EKEPWLLQHV SHVRFYENEW  60
FYFVTRKKRA GIIKADSKIP SRKVGGSGRW KTTGALTHIK NKYGVKIGSM KSICFKVKSE  120
TKQDGTTSGW VMHEFVLDKP GFQEMVLCRI RFYPRKDNAQ YAPILTPIMI GLEREDGSTV  180
VENNFQNLDA PAETHQAQDM AQSIGSCSGD FVAFSAPQHQ QIMAQDHSIY PILNGSMEQH  240
QDLRSYGQQH NLIVGHSEQY GQGFRDMVQY QNQYLGQETT DPQPVPMMMN QALNEEQQWN  300
GYSGSSSAYQ YLGQEMVLMR QCLMAHHQEK HLAAQRQQLS VNGSMEEYQY FGSSGQQQNH  360
ILGREATYVS LMEDQQQQNQ NLFWRQETDP SHSAQAIEEQ QQWNGYFGPY SAQPYDQGMM  420
EHQDFGSSSL CLAQNHQYLR QNNDLSALGE LAAQQQHLGE DSNLSLTQQQ NQIPGQATDL  480
SPMEQQVWQT DYQSQLFGQS ADLSQVPIMM NQALEEQHYV PWQAQLYDQY KGQNNALPTV  540
PMETQQQHDN VIRNSAAQLQ LEQQENVHLM NQTMEEQAIN LPMNQSIDES HGGIVGSLTH  600
NELTQQRLGD QTYPEIVSEL TNFGNEEWAQ QLGRNTPEEE AELSAALANC TTLDSLLNFF  660
LEEESSKRSL FFLYGRNSKM FVLTITSPST TLIRPLKPNG LNRSPILCLN QRRQSKTGTG  720
KSWLVPTSLS LFGSGFFLGP LLDGLHSRVD LVVYKNGAFQ IGPLHTNIWV PFLLGLFYCT  780
VGLLQLLLDE KTSTKPPRGN LDKTVISLFV SDRLYGLVNE NRALVLFLEL SAEMYKAGVS  840
DNIEAYILFA LAEFLWFSLD RTWLGFTIAS LLGIACPLAE IPIMQFFHLW YYPQANIEIF  900
GQGLVTWTTT CYFVYTPFLI NLARWLKTVM QTTTTDVDIT K
Cis-element ? help Back to Top
SourceLink
PlantRegMap676709794
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY2992601e-100AY299260.1 Arabidopsis thaliana clone C5 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009111333.11e-171PREDICTED: uncharacterized protein LOC103836792
TrEMBLA0A3N6PKP11e-177A0A3N6PKP1_BRACR; Uncharacterized protein
STRINGBra036314.1-P1e-176(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27300.11e-16NTM1-like 8