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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 676709550 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
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Family | TCP | ||||||||
Protein Properties | Length: 191aa MW: 20938.7 Da PI: 8.7673 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 114.8 | 1.2e-35 | 42 | 138 | 8 | 106 |
TCP 8 hskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssgkaaksaakskksqksaas 106 ++++hTkv+gR+RRvR++a+ aar+F+L++eLG+ +d++tieWLl+qa+p+i+++tg+++++++ + +ss++s+ + + ++++++ ++q+++++ 676709550 42 SKDRHTKVNGRGRRVRMPALAAARIFQLTRELGHRSDGETIEWLLNQAEPSIIAATGSGTNPSELV--SSSVESSPQMMFAMVPPQTQTQMQPQQPPNC 138 79********************************************************99999333..2222222222222333333355555555555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 4.0E-30 | 41 | 125 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 27.009 | 42 | 96 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007623 | Biological Process | circadian rhythm |
Sequence ? help Back to Top |
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Protein Sequence Length: 191 aa Download sequence Send to blast |
MVFHKLNTTE STNLNAVVAS DSRPQTQITV SKPSTGRVPA ASKDRHTKVN GRGRRVRMPA 60 LAAARIFQLT RELGHRSDGE TIEWLLNQAE PSIIAATGSG TNPSELVSSS VESSPQMMFA 120 MVPPQTQTQM QPQQPPNCRL DLCQPIGVQY SVNGYNHMPF TAMLLQPLTT AESDVEIAAE 180 ERRQREALGR S |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 676709550 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006410877.2 | 1e-94 | transcription factor TCP11 | ||||
Swissprot | Q9SJK7 | 2e-62 | TCP11_ARATH; Transcription factor TCP11 | ||||
TrEMBL | A0A1J3JRI9 | 4e-93 | A0A1J3JRI9_NOCCA; Transcription factor TCP11 | ||||
TrEMBL | V4LP21 | 3e-93 | V4LP21_EUTSA; Uncharacterized protein | ||||
STRING | XP_006410877.1 | 5e-94 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15265 | 16 | 18 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37000.1 | 2e-57 | TCP family protein |