PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676708974
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family bZIP
Protein Properties Length: 1023aa    MW: 114684 Da    PI: 7.9001
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676708974genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_148.91.4e-15213255548
                CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkke 48 
                +r++r++kNRe+A rsR+RK+a++ eLe kv +Le+eN++L+ +
  676708974 213 RRQKRMIKNRESAARSRARKQAYTHELEIKVSSLEEENEKLR-R 255
                79*************************************999.3 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.0E-14205255No hitNo description
SMARTSM003382.4E-15209274IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.174211255IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.31E-10213256No hitNo description
PfamPF001701.3E-12213254IPR004827Basic-leucine zipper domain
CDDcd147078.56E-22213257No hitNo description
PROSITE patternPS000360216231IPR004827Basic-leucine zipper domain
PROSITE profilePS513755.36333367IPR002885Pentatricopeptide repeat
PROSITE profilePS513758.999368402IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.104.0E-10368395IPR011990Tetratricopeptide-like helical domain
PfamPF015350.0039371398IPR002885Pentatricopeptide repeat
PROSITE profilePS513756.675404429IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007561.5E-5404430IPR002885Pentatricopeptide repeat
PfamPF015352.2E-5404429IPR002885Pentatricopeptide repeat
PROSITE profilePS5137510.49430464IPR002885Pentatricopeptide repeat
PfamPF130413.3E-7432475IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007561.3E-4433466IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.104.0E-10497517IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS513756.599500530IPR002885Pentatricopeptide repeat
PROSITE profilePS5137510.72531565IPR002885Pentatricopeptide repeat
PfamPF130416.0E-8532577IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007569.1E-6533566IPR002885Pentatricopeptide repeat
PROSITE profilePS513755.448566600IPR002885Pentatricopeptide repeat
PROSITE profilePS513755.831601631IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.104.0E-10604773IPR011990Tetratricopeptide-like helical domain
PfamPF015350.11606627IPR002885Pentatricopeptide repeat
SuperFamilySSF484521.43E-6618656IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS513758.868632662IPR002885Pentatricopeptide repeat
PfamPF015352.9E-4634662IPR002885Pentatricopeptide repeat
PROSITE profilePS513758.802668703IPR002885Pentatricopeptide repeat
PfamPF015350.014670698IPR002885Pentatricopeptide repeat
PROSITE profilePS513756.434704734IPR002885Pentatricopeptide repeat
PROSITE profilePS513756.774736766IPR002885Pentatricopeptide repeat
PfamPF015351.3738764IPR002885Pentatricopeptide repeat
SuperFamilySSF484521.43E-6751790IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS513757.574770804IPR002885Pentatricopeptide repeat
PfamPF144327.5E-36806929IPR032867DYW domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1023 aa     Download sequence    Send to blast
MGSLRGNIEE PISQSLPRQN SLYSLKLHEV QNHLGSSAKP LGSMNLDELL KSVWSAEANQ  60
PPEATEEGVC RQGSLTLPRD LSKKTVDEVW RDIHLDKNGS STNPHGERID TNNNKQPTLG  120
EITLEDLLLK AGVVTETIVP QNVVNVASNG QWVPYHQPQH QHQGFMPYPV CEMQEMVSPT  180
SLMMGGLSDT PQAHGRKRVA SSGGDIVEKT VERRQKRMIK NRESAARSRA RKQAYTHELE  240
IKVSSLEEEN EKLRRLKLFQ TFEYVHLFKC ELDKHHPTKT LCANSKFCSL MQNQVSSVVR  300
PLSSDSATAI ASLCSKGNFR EAFQRFGHNI FTNTSLFTPF IKSFATRQSL PSGKQLHCLL  360
VVSGFSSDKF ICNHLMSIYS KFGDFPSAVA LYNRMPKKHF MSSNILINGY VRDGDLVSAR  420
KVFDEMPDRK LTTWNAMIAG LVQFEYNEEG LRLFREMHGL GFSPDEYTLG SVFSGSAGLR  480
SVFIGQQIHG YTIKYGLELD SVVNSSLAHM YMRNGKLQDG QNVIRSMPVR TLVAWNTLIS  540
GYAQEGCPET VLYQYKKMKI SGYRPDKITF VTVLSSCSDL AIRGQGQQIH AEAIKTGASS  600
VVAVVSSLIS MYSKCGCLED AAKAFSERDD EDEVMWSSMI SAYGFHGQGC EAIKLFNTMV  660
EETEMEINEV TFLNLLYACS HSGLKDKGLE LFDMMVEKYG FKPSLRHYTC VVDLLGRAGN  720
LDQAEAKIRS MPIKPDTVIW KTLLSACNIH KNPEMAQRAF EEILQIDPND SSCYVLLANV  780
HASAKRWRDV SEVRKSMRDK NVKKEPGISW FEHKGEVHRF KMGDRSQSQS KEIYSYLKEL  840
TLEMKLKGYM PDTASVLHDM DDEEKESDLV QHSEKLAVAF ALMILPEGVP IRIIKNLRVC  900
GDCHVAFKYI SLIKKREITL RDVTRLRSVS NADQLCANVL GCVVLGMEMV RCQLHLLEAC  960
LQRASVFHAP FVIAGCLSLV RLGSNLAGGS NNKSINDLNN QPTKENETER PRGKAEVESQ  1020
PSA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5iww_D7e-6029977013332PLS9-PPR
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap676708974
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0042610.0AC004261.3 Arabidopsis thaliana chromosome 2 clone T3K9 map CIC11C08, complete sequence.
GenBankCP0026850.0CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013688013.10.0pentatricopeptide repeat-containing protein At2g41080-like
SwissprotQ8S9M40.0PP198_ARATH; Pentatricopeptide repeat-containing protein At2g41080
TrEMBLA0A3P6C6S30.0A0A3P6C6S3_BRAOL; Uncharacterized protein
STRINGBostr.9345s0023.1.p0.0(Boechera stricta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41070.31e-117bZIP family protein
Publications ? help Back to Top
  1. Aubourg S,Boudet N,Kreis M,Lecharny A
    In Arabidopsis thaliana, 1% of the genome codes for a novel protein family unique to plants.
    Plant Mol. Biol., 2000. 42(4): p. 603-13
    [PMID:10809006]
  2. Lurin C, et al.
    Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins reveals their essential role in organelle biogenesis.
    Plant Cell, 2004. 16(8): p. 2089-103
    [PMID:15269332]