PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676708942
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family TCP
Protein Properties Length: 348aa    MW: 38526.8 Da    PI: 8.1659
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676708942genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP113.43.1e-35491652135
        TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssgkaaksaakskksq 101
                 g+kdrhsk+ T++g+RdRR+Rls+ +a++f+dLqd+LGfd++sk++eWL+++a ++i el+  +++                    +a + +++  +s 
  676708942  49 SGGKDRHSKVLTSKGLRDRRIRLSVATAIQFYDLQDRLGFDQPSKAVEWLINAASESISELPPINANFD------------------QALSLSKSACSSG 130
                689************************************************************933333..................2222223344555 PP

        TCP 102 ksaasalnlak.esrakarararertrekmriknk 135
                +s++s l+l++ e r kar+rarert++++ ++ +
  676708942 131 TSESSLLSLSRtEIRGKARERARERTAKEKDKDLQ 165
                6666779999999***********99998877654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036344.0E-3350129IPR005333Transcription factor, TCP
PROSITE profilePS5136931.62451109IPR017887Transcription factor TCP subgroup
PROSITE profilePS513709.766142160IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008285Biological Processnegative regulation of cell proliferation
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MEVDDDIDEQ QQQQTSRKLQ RISSDNNDKT GMRDWNNPSS RIIRVSRASG GKDRHSKVLT  60
SKGLRDRRIR LSVATAIQFY DLQDRLGFDQ PSKAVEWLIN AASESISELP PINANFDQAL  120
SLSKSACSSG TSESSLLSLS RTEIRGKARE RARERTAKEK DKDLQNAQSS FTQLLTGGFD  180
EPNRHWTGGG GGSSDCFNPV QLIPNSSSSS LHHFNSNHHR QETSLSHHNH NHNHNHFSFV  240
PDYNFGISSS DSPGAAAING GCYSSRGTLQ SNSQSLFLNN SNNINQRSIS SSSSSSSPTD  300
SQSISFFMAT PPPLDHHSHQ LPAAFDGRLY LYYGEGNRNS DEKAKDRR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A1e-2156110155Putative transcription factor PCF6
5zkt_B1e-2156110155Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). In association with ABAP1, exerts a negative role in cell proliferation in leaves, possibly by inhibiting mitotic DNA replication. Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:18818695, ECO:0000269|PubMed:25378179}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00169DAPTransfer from AT1G30210Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676708942
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3531561e-178AK353156.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-21-I20.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009115180.10.0PREDICTED: transcription factor TCP24-like
RefseqXP_009115181.10.0PREDICTED: transcription factor TCP24-like
SwissprotQ9C7581e-154TCP24_ARATH; Transcription factor TCP24
TrEMBLM4EU830.0M4EU83_BRARP; Uncharacterized protein
STRINGBra032365.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM138401726
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30210.21e-111TCP family protein
Publications ? help Back to Top
  1. Wang H,Mao Y,Yang J,He Y
    TCP24 modulates secondary cell wall thickening and anther endothecium development.
    Front Plant Sci, 2015. 6: p. 436
    [PMID:26157444]
  2. Zhu P, et al.
    Arabidopsis small nucleolar RNA monitors the efficient pre-rRNA processing during ribosome biogenesis.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(42): p. 11967-11972
    [PMID:27708161]