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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 676708478 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
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Family | ERF | ||||||||
Protein Properties | Length: 153aa MW: 16121.2 Da PI: 8.4811 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 50.2 | 6.2e-16 | 87 | 136 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+G+r ++ +g+Wv+eIr+p++ ++r++lg++ +e+Aa+a++ a+++l+g 676708478 87 PVYRGIR-CR-SGKWVSEIREPKK---TTRVWLGTYPVPEMAAAAYDVAALALKG 136 68****9.55.6*********854...5***********************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.8E-9 | 87 | 136 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.414 | 88 | 144 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.5E-25 | 88 | 146 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.2E-25 | 88 | 150 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.16E-17 | 88 | 146 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 4.85E-16 | 89 | 146 | No hit | No description |
PRINTS | PR00367 | 8.5E-6 | 89 | 100 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.5E-6 | 126 | 146 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 153 aa Download sequence Send to blast |
MTDPNNPFIE PKATSQASSS SVTTIVSART CGDSLSGSAT CEKSCPLATL TTVTVSFAAA 60 TSTTSCNDND TIMATDAGPI SRRKKHPVYR GIRCRSGKWV SEIREPKKTT RVWLGTYPVP 120 EMAAAAYDVA ALALKGGDTV LNFPDSVGSY PIP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 676708478 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189437 | 2e-51 | AC189437.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB069A23, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018455023.1 | 4e-75 | PREDICTED: ethylene-responsive transcription factor ERF026-like | ||||
Swissprot | Q9CAN9 | 8e-61 | ERF26_ARATH; Ethylene-responsive transcription factor ERF026 | ||||
TrEMBL | A0A078IJF1 | 3e-72 | A0A078IJF1_BRANA; BnaA09g10750D protein | ||||
TrEMBL | A0A3P5XWN0 | 3e-72 | A0A3P5XWN0_BRACM; Uncharacterized protein | ||||
TrEMBL | M4EFQ2 | 3e-72 | M4EFQ2_BRARP; Uncharacterized protein | ||||
STRING | Bra027615.1-P | 5e-73 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1957 | 27 | 77 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G12630.1 | 8e-31 | ERF family protein |