PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676705068
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family B3
Protein Properties Length: 326aa    MW: 36194.7 Da    PI: 10.1183
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676705068genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.43.9e-16158248197
                EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                f+k +++s+v+   +l lp +f+++   +k ++  +tl de+g+++e  +    k+ +  l++GW +F+ a++L  gD +vF+l++r+  +l ++v+
  676705068 158 FVKSMLQSHVSGCFWLGLPVHFCRSQL-QK-QDGVITLIDEEGEEFETVY--LAKRTG--LSGGWMGFAVAHNLAYGDALVFELVRRTVLKLELQVI 248
                89*********************8884.43.4448***************..555544..*************************998888887765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.34E-19153242IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.8E-16155243IPR015300DNA-binding pseudobarrel domain
CDDcd100171.08E-20156239No hitNo description
PfamPF023621.2E-13158247IPR003340B3 DNA binding domain
SMARTSM010194.8E-20158251IPR003340B3 DNA binding domain
PROSITE profilePS5086310.785158255IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MVVAKPCPYE DFRLRRVEEN KKRMEALNLP KLCQNLHSTS VKTSPMWQMK KSTLRSSEKQ  60
LVIVRRSSRI SNTCSSPGYK EASCCSTSID TQKVKFHKDL IFLLFCKYKT KTIVLLPFRV  120
SKRRDLSNRV YVSEEVKEEA ISKAEKLQAG LGNGFPSFVK SMLQSHVSGC FWLGLPVHFC  180
RSQLQKQDGV ITLIDEEGEE FETVYLAKRT GLSGGWMGFA VAHNLAYGDA LVFELVRRTV  240
LKLELQVIFH VTPSSSVSPT QPSFLVQSSI ASSRSSSPCI GNGANEPAAS SVSSSASSAS  300
IPFISSLSET CSRRCTRVGV QRSKSR
Cis-element ? help Back to Top
SourceLink
PlantRegMap676705068
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009123694.21e-103PREDICTED: B3 domain-containing protein At5g42700
SwissprotQ9FMZ45e-88Y5270_ARATH; B3 domain-containing protein At5g42700
TrEMBLA0A3P6DF051e-105A0A3P6DF05_BRAOL; Uncharacterized protein
STRINGBra035324.1-P1e-106(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM37442759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.14e-89B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]