PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676703688
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family bHLH
Protein Properties Length: 226aa    MW: 25947 Da    PI: 6.2494
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676703688genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.11.2e-111511911055
                HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                r+RR+riN+++ +L++l+P+      +K++ +++Le+Av+Y+k Lq
  676703688 151 RKRRERINDRLKTLQRLVPNG-----TKVDISTMLEEAVHYVKFLQ 191
                9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.218141190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-14141207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.8E-13146203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.3E-12147196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.40E-12150195No hitNo description
PfamPF000104.6E-9151191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MDEAFVNGEL ESLLGMFNFD QFSSDDSSFY NEQHHHSNEI DISSCNDFFP FATILERNYP  60
AVPDGSNHET NLYIDSRQEL VKPRKKQKLS SESNLVSEPQ TTWRDVPNIN SFNSSDNEKA  120
ICLETNTSKS LQRKAKPNKG TATDPQSLYA RKRRERINDR LKTLQRLVPN GTKVDISTML  180
EEAVHYVKFL QLQIKLLSSD DLWMYAPIAQ NGLNMGLHNN LLSRFL
Cis-element ? help Back to Top
SourceLink
PlantRegMap676703688
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0230305e-41AB023030.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K24F5.
GenBankCP0026885e-41CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024013157.11e-126transcription factor bHLH139
SwissprotQ3E7L71e-122BH139_ARATH; Transcription factor bHLH139
TrEMBLV4L3421e-122V4L342_EUTSA; Uncharacterized protein
STRINGXP_006403282.11e-122(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41322257
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43175.11e-104bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]