PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 64506
Common NameMICPUN_64506
Organism
Micromonas sp. RCC299
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas
Family C3H
Protein Properties Length: 963aa    MW: 107646 Da    PI: 10.1388
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
64506genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.92.6e-06520545126
              --S---SGGGGTS--TTTTT-SS-SS CS
  zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
              +k +lC ++ r G C+ Gd C +aHg
    64506 520 FKSKLCEDWTRHGRCPAGDVCGYAHG 545
              5889*********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.108.2E-11516550IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.67E-7517550IPR000571Zinc finger, CCCH-type
SMARTSM003566.5E-5519546IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.197519547IPR000571Zinc finger, CCCH-type
SuperFamilySSF547911.3E-9735789IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.101.9E-10735788IPR004088K Homology domain, type 1
PROSITE profilePS5008411.909736782IPR004088K Homology domain, type 1
CDDcd001056.52E-9736783No hitNo description
PfamPF000131.0E-8736783IPR004088K Homology domain, type 1
SMARTSM004519.7864898IPR003604Zinc finger, U1-type
SMARTSM003555.6867891IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280869891IPR007087Zinc finger, C2H2
SMARTSM004512.4E-6910944IPR003604Zinc finger, U1-type
SuperFamilySSF576671.19E-9912946No hitNo description
SMARTSM003552.4913937IPR015880Zinc finger, C2H2-like
PfamPF128741.6E-8914937No hitNo description
PROSITE patternPS000280915937IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 963 aa     Download sequence    Send to blast
MSAIPATPAF EDETRAASPA AGLHPALTKN HAPRDDVPEK TTTTCLFSSD EEPVGSTTPS  60
NAEAPAPKSK RRRHRHPKHV RDAIKAGAAA ASRVRSPYSP DPEAEKSTGR GWENDSTAGT  120
KIRTAETDAT GDSAGKFICD DDWNLSHGRG SNTSKPAAIM SRAGGLEVRV DRGRAAAEAS  180
RAREFGPKAR WTCRVKRSPP KRGDETSRDR PPPHLRYAPR LRSPDDDDDD GGSEPSLAPS  240
SDDDDDDGWG PTVGLARKRH HSFNAVATAG AIAAAHERAA LEAAHEALEA LGDSEEERGT  300
EDFPAPRAEE EKERVTDARA TSTERVARER TRERRRSRSP IRQIRVAARA KTLSPETRRG  360
ASPQPSRFSR RVSVTRGPQR WSPPRDRWHD RDARRRLSRS RSRSRSPSPR RRHPSSWSPT  420
HRRRDREDDW NPAGERNAFP YASRRDPYAS PPRASPIERT CASDPRKATS SGLLQPRREE  480
PYPTPPPRSE SFPLPHWSTR TFGTVEAAAV QQTTGQPMKF KSKLCEDWTR HGRCPAGDVC  540
GYAHGASQLR DSVVPGFDPT NESHVRAHTY RACVHTALCH VSRSRVWVDE FADVFRYVWN  600
TDLELPVRFG GVPYSMEEYL VRFMSPHTVR VFELDGRAAV TLATPTFDEA RRRETNDDDA  660
FGVRRGVRGD GRENERPWAA DDWSSDRDDR YDRSNNLRRR DGDFFSADEE RPRKKPRAIV  720
VDRRDAWFID TNGNNGLIIG AKGKTIKAME SQSGANIDAN SKAHIVEIFG RADAVRSARL  780
MIEHKLGEFH KDFIGAATMR DLLNARRREP NRSTGARQSP HRQSPAADRG EDSRDSVTEP  840
CATPIDNEQS PSRQERQSPM KPPAADHGCE ACGLRFTDEK ELRAHKLTKG HLSSIRAAAG  900
FDSPKTLVEH KRPKCELCDV TCTSNVNLRA HYAGRKHKEM LARREAEDRK TKAEDWKKKN  960
SR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1327337RERTRERRRSR
2710716RPRKKPR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0013330.0CP001333.1 Micromonas sp. RCC299 chromosome 15, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002506388.10.0predicted protein
TrEMBLC1EIA30.0C1EIA3_MICCC; Uncharacterized protein
STRINGXP_002506388.10.0(Micromonas sp. RCC299)
Publications ? help Back to Top
  1. Worden AZ, et al.
    Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.
    Science, 2009. 324(5924): p. 268-72
    [PMID:19359590]