PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 63448
Common NameMICPUN_63448
Organism
Micromonas sp. RCC299
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas
Family GATA
Protein Properties Length: 410aa    MW: 44354.1 Da    PI: 8.7267
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
63448genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA23.58e-08542135
   GATA  1 CsnCgttkTplWRrgp...dgnkt.LCnaCGlyyrkkgl 35
           C++Cg  kTp WRrg+    g++  LCnaCG ++   +l
  63448  5 CASCGGDKTP-WRRGWtvkAGERAlLCNACGQRWSAGRL 42
           **********.*****999888878*********87765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004010.006153IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.0E-6354IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577164.28E-5351No hitNo description
CDDcd002023.02E-8459No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
MSHACASCGG DKTPWRRGWT VKAGERALLC NACGQRWSAG RLRPPVPSEP PRKKRRSSLP  60
AAAAPVPIAA RVAPPCFSPR ESEPIDDGGK EVDGADAETP RRATRRSLPS GHRRPSAGEP  120
FEGEDLPETF HPTAVPVILR QLGPGRWCRY AAFRERPPIH ERGKRTRTFE LVAEDGTALE  180
AVVGTASASS NHKYRYEVCN GLVSLAMDRM GRPFASPPTP GHLRNARDAC AWLRAVVRES  240
VSADQSFCAA VAAAVAVDAA VRREDLGGTW RALEHALGQN MWRWATDTAG ELAVARLHEM  300
VRRIDEGAGI VRGRNALTAR DAAEIVSELR CVWMRVDGGI NMETLEETGI ARAVAKIASM  360
EGNRAARETV DAASAILKEW RETQAGLVAT LENFLGSEAA HEREVSASR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0013310.0CP001331.1 Micromonas sp. RCC299 chromosome 13, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002505423.10.0predicted protein
TrEMBLC1EFY50.0C1EFY5_MICCC; Uncharacterized protein
STRINGXP_002505423.10.0(Micromonas sp. RCC299)
Publications ? help Back to Top
  1. Worden AZ, et al.
    Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.
    Science, 2009. 324(5924): p. 268-72
    [PMID:19359590]