PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 63353
Common NameMICPUN_63353
Organism
Micromonas sp. RCC299
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas
Family MYB_related
Protein Properties Length: 692aa    MW: 76512.7 Da    PI: 5.1173
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
63353genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.65.7e-08106148347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +W  +E+ ++ +a  ++G + Wk+ a+++g +R + +  s+ qk+
            63353 106 PWDDQEEVKFREALVLYGRD-WKKCAEHVG-TRDARSFTSHAQKH 148
                      7*****************77.*********.**999999999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.66599153IPR017930Myb domain
SuperFamilySSF466895.31E-7100147IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.7E-4102139IPR009057Homeodomain-like
SMARTSM007171.8E-6103151IPR001005SANT/Myb domain
CDDcd001671.58E-4106149No hitNo description
PfamPF002491.7E-5106148IPR001005SANT/Myb domain
CDDcd080677.34E-84436603No hitNo description
SuperFamilySSF1027122.22E-16438560No hitNo description
SMARTSM002320.0074439574IPR000555JAB1/MPN/MOV34 metalloenzyme domain
PfamPF013983.2E-12440542IPR000555JAB1/MPN/MOV34 metalloenzyme domain
Gene3DG3DSA:3.40.140.101.0E-14458564No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 692 aa     Download sequence    Send to blast
MADPDAASAA LIAKLLQEEN PYGEDVYGYQ DDSDDEDYGR AKRKKKKKAP KPPKEPKPPK  60
EPKPPKEPKA PKEPKRPREP TGDEEFTETG RRKRKDAGTA RAKARPWDDQ EEVKFREALV  120
LYGRDWKKCA EHVGTRDARS FTSHAQKHFI KLCLQGKPLP AKVRETGDGY TLSGKPLDPN  180
SSAAKQYGFK VDTSFTLPDG TRPAGLMTAE DAEEAEKARQ AKVAETVGKL PVDSDGRFKV  240
GTVLRKKFDE EVERDENADA NPNVGTEDDD SAEKWIEGKV VDVDKDDADN PLPYSVEFDD  300
GTFEDLAHEE LEVWVQARIK HQKTEERRAW EEEMERKRSE REAEREAKLA DKEQKAAEKA  360
AEKEAKQLAK VREARDRAAA EAAAAEPTEY ARSRPRRETA AVGATTFRDA GGGTLELHPM  420
RKFSPSPPGS GVPGAQPFKL TVSPAAMLVM DLHAHLCTNE VIGYLGGSWD PDTKSLTIER  480
AFPGRGVASG MDVEMDPIAE VELKSQVEAQ NMKVVGWYHS HPVFEPTPSG VDINNQLNYQ  540
RLFRDEPVGV EPFVGFIVGP YDMRLPNQVS SVTAFCAQRL MKAGATEDVP FEVSYGLSDD  600
KDVEPLTVGS MAAVVVQNKS TEGRVNPTEL WRPFTTFENF KPGGGPCTKL AKLRASLCAR  660
LPAGMSELRE EEIMDGVAKT IQTSWGVDLG Y*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14147KRKKKKK
29095RRKRKD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0013310.0CP001331.1 Micromonas sp. RCC299 chromosome 13, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002505629.10.0predicted protein
TrEMBLC1EFP50.0C1EFP5_MICCC; Uncharacterized protein
STRINGXP_002505629.10.0(Micromonas sp. RCC299)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP229888
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01280.22e-10MYB_related family protein
Publications ? help Back to Top
  1. Worden AZ, et al.
    Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.
    Science, 2009. 324(5924): p. 268-72
    [PMID:19359590]