PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 63124
Common NameMICPUN_63124
Organism
Micromonas sp. RCC299
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas
Family WRKY
Protein Properties Length: 414aa    MW: 43929.7 Da    PI: 11.0176
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
63124genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY89.82.1e-2874129259
            --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
   WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
            +Dgy+WrKYGqK +kg+ fprsYYrCt ++Cp++k+ve + +dp    i Yeg+Hnhe
  63124  74 EDGYRWRKYGQKIIKGAAFPRSYYRCTAPNCPARKHVEGDPKDPG--SIAYEGTHNHE 129
            7****************************************9997..689*******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081124.83468131IPR003657WRKY domain
SuperFamilySSF1182901.44E-2370131IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.8E-2671131IPR003657WRKY domain
SMARTSM007746.9E-3173130IPR003657WRKY domain
PfamPF031061.0E-2274129IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:1900150Biological Processregulation of defense response to fungus
GO:1900425Biological Processnegative regulation of defense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MDNEFVSEKW APERRALFRL STLHETPAHS ARSKVRAPTA PDALSKPPPP IALAFDAFPP  60
SLHRPFTPAM PPSEDGYRWR KYGQKIIKGA AFPRSYYRCT APNCPARKHV EGDPKDPGSI  120
AYEGTHNHEP PTGSNRGKKR KSVDQNSKPP LSPNSKAMKM KTTKKSSSHR SSELQNVTPR  180
FWERAEALAM ETLGSLSPGS RKRAAKLTSS RNKRKSGNGL AVQVPDLISG GAPTSITAAL  240
VRVDSGDVTN ISGDVTNISG FTNMEIPASA RTGNTRVSPR SKKNVGESDR GANGELKSVR  300
SKPGNHVPVG GAGYGDLAST TGAKKIKRPR PLIIDAEAAA AIEDAGTPLL TIGNGRAAGE  360
VPGLLSARRR DGTSLRKAAA MGWASQTPRS PLVTPGSAGN ALMESLAYIT TPK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-20741311877Probable WRKY transcription factor 4
2lex_A4e-20741311877Probable WRKY transcription factor 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1326330KRPRP
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0015770.0CP001577.1 Micromonas sp. RCC299 chromosome 12, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002509266.10.0WRKY family transcription factor
TrEMBLC1FJ400.0C1FJ40_MICCC; WRKY family transcription factor
STRINGXP_002509266.10.0(Micromonas sp. RCC299)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP4691626
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13960.16e-21WRKY DNA-binding protein 4
Publications ? help Back to Top
  1. Worden AZ, et al.
    Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.
    Science, 2009. 324(5924): p. 268-72
    [PMID:19359590]