PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantTFDB

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Binding Motif |

Orthologous Group |

Basic Information? help Back to Top

TF ID

62997

Common Name

MICPUCDRAFT_62997

Organism

Micromonas pusilla CCMP1545

Taxonomic ID

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas; Micromonas pusilla

Family

Protein Properties

Length: 326aa MW: 33544.3 Da PI: 10.8488

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
62997	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	91.8	5.3e-29	4	61	1	60
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 +dDgy+WrKYGqK +kg++fprsYYrCtsa+Cp++k+ve + + tYegeHnhek 62997 4 VDDGYRWRKYGQKIIKGAPFPRSYYRCTSANCPARKHVEGDP--SLLSSLTYEGEHNHEK 61 59***********************************988..677899******85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50811	26.716	1	62	IPR003657	WRKY domain
SMART	SM00774	1.4E-33	4	61	IPR003657	WRKY domain
Gene3D	G3DSA:2.20.25.80	1.2E-26	4	62	IPR003657	WRKY domain
SuperFamily	SSF118290	1.14E-23	4	62	IPR003657	WRKY domain
Pfam	PF03106	2.2E-24	5	60	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009863	Biological Process	salicylic acid mediated signaling pathway
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 326 aa Download sequence Send to blast
MPGVDDGYRW RKYGQKIIKG APFPRSYYRC TSANCPARKH VEGDPSLLSS LTYEGEHNHE 60 KPAPGRNANG SVKKKTGPSG DSASKPAFKK PAPLTVSDRN SSHRARDGRG LTPGSRGGQL 120 DRAFTPRFWD KAEARAVETL EALSPRSRDR ASRIARDAAI AAAEKANPGR AHRGGGGGSN 180 APTPGGSQFL GDLPSALPSG RRDGKRARGG DGDGGGGGGG DGDGGGGGGG DGGPRSVASR 240 KKLRRPPALK LCSDLSAPDE AGTPLLALGG SDGGVVGNVP GLRSDGRSLR KAVLEKWVTS 300 PRDPVPTPNT AETPLDPLAF LTTPR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	6e-21	4	63	17	78	Probable WRKY transcription factor 4
2lex_A	6e-21	4	63	17	78	Probable WRKY transcription factor 4
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00260	DAP	Transfer from AT2G03340	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	-	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003061495.1	0.0	WRKY transcription factor
TrEMBL	C1N120	0.0	C1N120_MICPC; WRKY transcription factor
STRING	XP_003061495.1	0.0	(Micromonas pusilla)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP469	16	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G04880.2	1e-21	zinc-dependent activator protein-1

Link Out ? help Back to Top
Phytozome	62997
Entrez Gene	9687171

Publications ? help Back to Top
Worden AZ, et al. Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas. Science, 2009. 324(5924): p. 268-72 [PMID:19359590]