PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 62878
Common NameMICPUCDRAFT_62878
Organism
Micromonas pusilla CCMP1545
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas; Micromonas pusilla
Family G2-like
Protein Properties Length: 345aa    MW: 34180.4 Da    PI: 6.0193
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
62878genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like88.94.7e-2860113155
  G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
              k rl+WtpeLH rF++av++L G+ +A+Pktil+lm+v+g+t+e+v+SHLQkYRl
    62878  60 KRRLVWTPELHVRFMSAVNHL-GITNAVPKTILQLMNVEGMTRENVASHLQKYRL 113
              68*******************.9*******************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.52457116IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.9E-2958117IPR009057Homeodomain-like
SuperFamilySSF466892.69E-1958117IPR009057Homeodomain-like
TIGRFAMsTIGR015571.7E-2360113IPR006447Myb domain, plants
PfamPF002492.9E-663112IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MGTSHDDGDA GADADADADA DADADADADA AETETATTVT GEKRVSDGEK EATSGRATKK  60
RRLVWTPELH VRFMSAVNHL GITNAVPKTI LQLMNVEGMT RENVASHLQK YRLYLKRLAG  120
VPPNAPLPPD VMRRAHPYHF PAAAAFPPPT PTIEQMHAGL PPSMPSMQSM PSMQSMPATM  180
PNMSALMQMP AYNSAMGAMG AAMGGMGGMY ASWPPAPPAC AGSGAATMGL PGASASDPYG  240
AAAAQSFMNY VANYRPGGGV PGKDASSSAA AAAAAAAMAS HGWGFPGHAG GAWSAGAGAA  300
ATSAAMTSAA MTSAAMTSAA AASAIADGGC SAPAAGGPDA GGGK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A3e-2762116357Transcription factor LUX
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003061410.10.0g2-like myb-family transcription factor
TrEMBLC1N0L80.0C1N0L8_MICPC; G2-like myb-family transcription factor
STRINGXP_003061410.10.0(Micromonas pusilla)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1111645
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59570.11e-31G2-like family protein
Publications ? help Back to Top
  1. Worden AZ, et al.
    Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.
    Science, 2009. 324(5924): p. 268-72
    [PMID:19359590]