PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 62515
Common NameMICPUN_62515
Organism
Micromonas sp. RCC299
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas
Family ERF
Protein Properties Length: 530aa    MW: 54287.6 Da    PI: 9.7244
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
62515genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP267.32.9e-21135185155
    AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
            s y+GVr+++ +g+W+AeIrdp   + r +r +lg+f+taeeAa+a++aa++ ++g
  62515 135 SIYRGVRQRP-WGSWAAEIRDP---N-RgARLWLGTFDTAEEAARAYDAAARHIRG 185
            57********.**********8...3.35***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.34E-19135193No hitNo description
PfamPF008478.2E-15135185IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-22135193IPR016177DNA-binding domain
SMARTSM003806.6E-38136199IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-32136193IPR001471AP2/ERF domain
PROSITE profilePS5103223.788136193IPR001471AP2/ERF domain
PRINTSPR003674.1E-11137148IPR001471AP2/ERF domain
PRINTSPR003674.1E-11159175IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048825Biological Processcotyledon development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 530 aa     Download sequence    Send to blast
MAPAAHDKTD PASKKSAVEP TSDVDDDDDD EDDVSARAIF PLIFARLPIC EPIPASPRLL  60
NPARFVRASR GAANSALLAA FIAVECSICY FVELRTQGNS TALRPPRPPR SLTRAPSVHP  120
SRQPKVSKTK KTCSSIYRGV RQRPWGSWAA EIRDPNRGAR LWLGTFDTAE EAARAYDAAA  180
RHIRGPNART NFQLAPGEVP PPFVLPDPPA ARGRGKGGED GPPPGGGGRG AGRGGPGRPP  240
HATKKQARAV GEMPSIGGAG LNTGLPGYSL GGLGGPSGPQ RGSAGYHTNN SSLGSTAPND  300
LSALVNANLA LAQQNLAMAG QATGGDGGYI RLGLNSHANP SGMHPGEGMH PGEIPRLHNS  360
KRERAPSNPF LGTSFGVAGS FGSVFGHDYL SSTPENGGVF PMGSSPLLMG TSPDHAGGSG  420
RGGVHGKMEN SLGNGGGVFG SMKDHDFQVG SLGLGDDDIH AVGSLELGSP LDNFGDLLNS  480
LPKHSVGSGR GMGGRLPMRR ETRGISPTSA FGVGGGSGGI EEALAAGKR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-17137194664ATERF1
3gcc_A1e-17137194664ATERF1
5wx9_A1e-171371921571Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0013300.0CP001330.1 Micromonas sp. RCC299 chromosome 11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002505226.10.0erf-like protein
TrEMBLC1EE640.0C1EE64_MICCC; Erf-like protein
STRINGXP_002505226.10.0(Micromonas sp. RCC299)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1321540
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11140.18e-18cytokinin response factor 1
Publications ? help Back to Top
  1. Worden AZ, et al.
    Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.
    Science, 2009. 324(5924): p. 268-72
    [PMID:19359590]