PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 62160
Common NameMICPUN_62160
Organism
Micromonas sp. RCC299
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas
Family Whirly
Protein Properties Length: 348aa    MW: 36885.5 Da    PI: 10.8188
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
62160genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly127.57.4e-401883301137
  Whirly   1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvd.laskesceffhdpaakgsneGkvrkalkvePlpdG 102
             +vyk+kaa k + ++ptfe    g++  kr+Gg+lle+a+a+++r+ydW +kq+ +ls+ e+ el + l      +ffhdp++++  +G + k+lk eP+pdG
   62160 188 AVYKSKAAAKFQVIKPTFEVKPDGSRAKKRDGGVLLEMAPAVGPRQYDWAQKQTIMLSPLELVELTEsLHFGRGVNFFHDPGMGTNRQGAMTKSLKAEPMPDG 290
             59****************************************************************99*********************************** PP

  Whirly 103 s.Glfvnlsvtnsl..vkgnesf..svPvskaefavlrsl 137
             s G+f+n+ vt++    +g +++   + vs aefa+lr+l
   62160 291 SgGIFLNMGVTTGGdgANGGQRVnmNIAVSFAEFAALRHL 330
             *99*******986412455566545899**********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.30.31.103.7E-52176346IPR009044ssDNA-binding transcriptional regulator
SuperFamilySSF544474.94E-25181344IPR009044ssDNA-binding transcriptional regulator
PfamPF085362.4E-49189330IPR013742Plant transcription factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006281Biological ProcessDNA repair
GO:0032211Biological Processnegative regulation of telomere maintenance via telomerase
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0045910Biological Processnegative regulation of DNA recombination
GO:0009508Cellular Componentplastid chromosome
GO:0009570Cellular Componentchloroplast stroma
GO:0003697Molecular Functionsingle-stranded DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0003723Molecular FunctionRNA binding
GO:0042162Molecular Functiontelomeric DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MSLPQRLARS ASLARTLAAQ HAPAMKPAAA APIIASSSFS HHHHQQQHHR RSAATTTAAH  60
RSAGSGLPPL SFDEGGKWGG GKGKSVVWVP STAKAGQAKA YGGQAQQQQQ HGGQQQQHAR  120
SYQSPPPPPP ADGQRRRFQQ RDHVPGPGAP PPPPPPPQAT GARQFTAGNN KASSANDDAG  180
SRVYCDYAVY KSKAAAKFQV IKPTFEVKPD GSRAKKRDGG VLLEMAPAVG PRQYDWAQKQ  240
TIMLSPLELV ELTESLHFGR GVNFFHDPGM GTNRQGAMTK SLKAEPMPDG SGGIFLNMGV  300
TTGGDGANGG QRVNMNIAVS FAEFAALRHL SAYLTPRLMG FAEVFRD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1l3a_A9e-2518234137190p24: plant transcriptional regulator PBF-2
1l3a_B9e-2518234137190p24: plant transcriptional regulator PBF-2
1l3a_C9e-2518234137190p24: plant transcriptional regulator PBF-2
1l3a_D9e-2518234137190p24: plant transcriptional regulator PBF-2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17480GGKWGGG
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0015760.0CP001576.1 Micromonas sp. RCC299 chromosome 10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002508883.10.0predicted protein
TrEMBLC1FHQ20.0C1FHQ2_MICCC; Uncharacterized protein
STRINGXP_002508883.10.0(Micromonas sp. RCC299)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP20261516
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02740.21e-24ssDNA-binding transcriptional regulator
Publications ? help Back to Top
  1. Worden AZ, et al.
    Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.
    Science, 2009. 324(5924): p. 268-72
    [PMID:19359590]