PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantTFDB

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Basic Information? help Back to Top

TF ID

62104

Common Name

MICPUN_62104

Organism

Micromonas sp. RCC299

Taxonomic ID

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas

Family

Protein Properties

Length: 243aa MW: 26932.1 Da PI: 6.01

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
62104	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	27.5	5.2e-09	218	240	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 ++ C++f+r G C +G rCkF+H+ 62104 218 RAVCNDFLR-GRCDRGKRCKFSHD 240 789****.***********7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57756	3.14E-5	4	30	IPR001878	Zinc finger, CCHC-type
Gene3D	G3DSA:4.10.60.10	1.4E-4	4	22	IPR001878	Zinc finger, CCHC-type
PROSITE profile	PS50158	9.109	7	22	IPR001878	Zinc finger, CCHC-type
PROSITE profile	PS50103	15.45	215	242	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.44E-5	215	240	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	3.8E-5	216	241	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.2E-6	218	240	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	9.2E-6	220	241	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 243 aa Download sequence Send to blast
MTSRQICMTC GTRGHGASQC PERTRLHREH VLGTSEMPDV TAGALRRGPG GLQVLSYAKD 60 HTSALFQQAK EREERLREER ASRRDQEAPP NANSQPAKSG MSMVRLVKRK GVGVAEPGKK 120 AKLQVVLEDQ FKDDEDDEEE GLGGLLGDYD SDDDAEEEEP AKQQQKEDKE EKKDDKPKVK 180 LPAPSELGVL DLPDWTDEVH LGKVEEQKVS AKPVSKARAV CNDFLRGRCD RGKRCKFSHD 240 VS*

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP001576	0.0	CP001576.1 Micromonas sp. RCC299 chromosome 10, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002508853.1	1e-177	predicted protein
TrEMBL	C1FHJ4	1e-175	C1FHJ4_MICCC; Uncharacterized protein
STRING	XP_002508853.1	1e-176	(Micromonas sp. RCC299)

Link Out ? help Back to Top
Phytozome	62104
Entrez Gene	8246851

Publications ? help Back to Top
Worden AZ, et al. Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas. Science, 2009. 324(5924): p. 268-72 [PMID:19359590]