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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 62104 | ||||||||
Common Name | MICPUN_62104 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas
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Family | C3H | ||||||||
Protein Properties | Length: 243aa MW: 26932.1 Da PI: 6.01 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 27.5 | 5.2e-09 | 218 | 240 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 ++ C++f+r G C +G rCkF+H+ 62104 218 RAVCNDFLR-GRCDRGKRCKFSHD 240 789******.*************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57756 | 3.14E-5 | 4 | 30 | IPR001878 | Zinc finger, CCHC-type |
Gene3D | G3DSA:4.10.60.10 | 1.4E-4 | 4 | 22 | IPR001878 | Zinc finger, CCHC-type |
PROSITE profile | PS50158 | 9.109 | 7 | 22 | IPR001878 | Zinc finger, CCHC-type |
PROSITE profile | PS50103 | 15.45 | 215 | 242 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.44E-5 | 215 | 240 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.8E-5 | 216 | 241 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.2E-6 | 218 | 240 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 9.2E-6 | 220 | 241 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MTSRQICMTC GTRGHGASQC PERTRLHREH VLGTSEMPDV TAGALRRGPG GLQVLSYAKD 60 HTSALFQQAK EREERLREER ASRRDQEAPP NANSQPAKSG MSMVRLVKRK GVGVAEPGKK 120 AKLQVVLEDQ FKDDEDDEEE GLGGLLGDYD SDDDAEEEEP AKQQQKEDKE EKKDDKPKVK 180 LPAPSELGVL DLPDWTDEVH LGKVEEQKVS AKPVSKARAV CNDFLRGRCD RGKRCKFSHD 240 VS* |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP001576 | 0.0 | CP001576.1 Micromonas sp. RCC299 chromosome 10, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002508853.1 | 1e-177 | predicted protein | ||||
TrEMBL | C1FHJ4 | 1e-175 | C1FHJ4_MICCC; Uncharacterized protein | ||||
STRING | XP_002508853.1 | 1e-176 | (Micromonas sp. RCC299) |
Link Out ? help Back to Top | |
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Phytozome | 62104 |
Entrez Gene | 8246851 |
Publications ? help Back to Top | |||
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