PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 61323
Common NameMICPUCDRAFT_61323
Organism
Micromonas pusilla CCMP1545
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas; Micromonas pusilla
Family G2-like
Protein Properties Length: 428aa    MW: 45316.2 Da    PI: 5.4426
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
61323genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like99.62.2e-31152206155
  G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
              k+rlrWtpeLH+ Fv+av++LGG + AtPk i++lm+v+g++++hvkSHLQkYRl
    61323 152 KQRLRWTPELHKMFVDAVKRLGGLDLATPKGIMQLMDVEGMSIQHVKSHLQKYRL 206
              79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.947149209IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.2E-29150207IPR009057Homeodomain-like
SuperFamilySSF466894.66E-17151207IPR009057Homeodomain-like
TIGRFAMsTIGR015575.8E-24152207IPR006447Myb domain, plants
PfamPF002491.6E-7154205IPR001005SANT/Myb domain
PfamPF143797.7E-10380422IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MTRMSGIEDD SFSYSFLLIS GQLRDPTRLT PRPQTSSAPL GAGGGAAAAS GMNTSGTFWP  60
SDLDLDLESS DFLDSLLLGG EMMTTQQQHH HAGDERLGHG PVPLGARAAG EDHDPRVVLA  120
ERDAGDGLLP RALADERREP VARAVVASNN NKQRLRWTPE LHKMFVDAVK RLGGLDLATP  180
KGIMQLMDVE GMSIQHVKSH LQKYRLQDSG GGASEFRVSP DASASGKRPR SEEDDAGGNG  240
KDGNNSAGKT RRRPSAAERS AARLRAAEEK AREERDAARS MAAAAAAAAA AAVERQNVEL  300
ALLTGDAAGA RDALEMSSHH AASHVGGAYD DVLDLVAGPG ESGDGDGAWG DVLHDHAIVG  360
AAGDDVGLVD DVGSDPEAAA AMLKQLELQK KLHEHLMSQR RLQQQVEAHG VYLETILDQQ  420
KRRRGVE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A5e-19152205154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B5e-19152205154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C5e-19152205154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D5e-19152205154Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00252DAPTransfer from AT2G01060Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003054945.10.0g2-like myb family transcription factor
TrEMBLC1MHF40.0C1MHF4_MICPC; G2-like myb family transcription factor
STRINGXP_003054945.10.0(Micromonas pusilla)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1111645
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01060.14e-22G2-like family protein
Publications ? help Back to Top
  1. Worden AZ, et al.
    Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.
    Science, 2009. 324(5924): p. 268-72
    [PMID:19359590]