PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	24.3	5.3e-08	1062	1083	3	25
S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 3 telCrffartGtCkyGdrCkFaH 25 ++ Cr +++ G C yG+ C+FaH 61222 1062 QRVCREWLA-GKCLYGSDCRFAH 1083 689****.*********** PP
2	zf-CCCH	24.2	5.9e-08	1093	1114	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 +lCr+f+ G C++G+ C F+H+ 61222 1093 KLCRDFMM-GKCHRGAECVFSHD 1114 79****.***********7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.40.50.300	8.0E-45	346	417	IPR027417	P-loop containing nucleoside triphosphate hydrolase
SuperFamily	SSF52540	4.84E-54	357	416	IPR027417	P-loop containing nucleoside triphosphate hydrolase
Pfam	PF13086	5.9E-69	359	774	No hit	No description
SuperFamily	SSF52540	4.84E-54	492	599	IPR027417	P-loop containing nucleoside triphosphate hydrolase
Gene3D	G3DSA:3.40.50.300	8.0E-45	493	578	IPR027417	P-loop containing nucleoside triphosphate hydrolase
SuperFamily	SSF52540	4.84E-54	680	979	IPR027417	P-loop containing nucleoside triphosphate hydrolase
Gene3D	G3DSA:3.40.50.300	8.0E-45	730	812	IPR027417	P-loop containing nucleoside triphosphate hydrolase
Pfam	PF13087	7.4E-56	782	981	No hit	No description
Gene3D	G3DSA:3.40.50.300	6.0E-6	813	980	IPR027417	P-loop containing nucleoside triphosphate hydrolase
PROSITE profile	PS50103	15.216	1059	1086	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	7.3E-5	1061	1085	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.1E-4	1062	1083	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	8.7E-6	1063	1084	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.596	1089	1116	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	4.2E-4	1090	1115	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.6E-5	1092	1114	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	2.0E-4	1093	1114	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009506	Cellular Component	plasmodesma
GO:0004386	Molecular Function	helicase activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1156 aa Download sequence Send to blast
MAPGEDAARR RAIAVLREEE AKAAAAKAKG TKRPRGFVNR VAREGTAAGT GKGDLPERGQ 60 QGTKEWFERA ALGPLLWRRT TREELGMIPR EFANINSYVR SFEPVMMEEA RETIRKAWKE 120 SLAEKSQFAC SMASELKATG GGWRRVRFHI RDQADAEMFK ALCPDDGVVI ACVSTMNEAD 180 DPWPHDESGL DLPIAAAGLC KGINAKEQTV DFSFWISAEV DTATNPSTPG WREWHERSRV 240 RERLTLEAFE GVRRLVRGDR GDALIGGHAV AEEGEMDARP PPVSPHDRTW FLAPAGKLHS 300 WYNAYEALHH VRRLHGPMRQ AMLKPPKDGM PRVRNVPAPP LSVEIAGNQK FVDFLVKNFN 360 EPQLAAIKWA AAHTLRSYER EGDQSHEDPF PFTLVQGPPG TGKTQTVWGI LNTLHCLLFQ 420 RYYKSIHDAI ARGTSRATGT EFTAALDDDD AEWLRSARED GEEDEDKDGG GFTVRDLYTF 480 LRDTTGVERG QTYGVYKPRI LVCAPSNAAV DNLLERVITK RFHQLTGELY TPAVVRVTAS 540 ETVVSDAVGP VTTSRLVEDL IEMGKSDGKK FDGARWNAEF HKHAKFVKEA GNFIKYKEHE 600 LVELTMASAE PRTVPAEGDD VEPGEEIDTR NQKSHGIIAE ILGMNENRNR AVTEMARLAY 660 LLDNLGPNAH HVTRNQRIDG KVDRQMKYDQ QRAIRKVRAA LEASFVDDAE IVFTTLTSSS 720 RKVFRQLTHG FDTVLIDEAA QANEMATLIP FLHGARRCVL VGDPQQLPST VISKHAQQVS 780 FQRSLFERFN ELGAEALLLS VQYRMHPEIR EFPSEEFYEG RLMDSACVIK RRPEPYQQKE 840 SGLGTYRIFD AHGLEERTTS NSVINHFEAI LVVCLYKKID KVLRDGTGES AEGKVSVVTP 900 YKEQVTVIRK AFEQLCGGEG AASRLRVQIN TIDGYQGQES DVIIFSTVRG SGDGGIGFLS 960 DIRRLNVAIT RAKKALYIVG RVGKLRAAQA GGEFTVWRDL VQNAMDRGCI VDDADPRVTF 1020 ADVVPVEEQE RAMSKLTKGN RRGVGFKPLK PRHPENPQPD NQRVCREWLA GKCLYGSDCR 1080 FAHEKRYDAK SKKLCRDFMM GKCHRGAECV FSHDTAMGGG GGGGGVSKYS ALPPPPSTSA 1140 RRDGDERQQP VIDDI*

Sequence ? help Back to Top

Protein Sequence Length: 1156 aa Download sequence Send to blast

MAPGEDAARR RAIAVLREEE AKAAAAKAKG TKRPRGFVNR VAREGTAAGT GKGDLPERGQ  60
QGTKEWFERA ALGPLLWRRT TREELGMIPR EFANINSYVR SFEPVMMEEA RETIRKAWKE  120
SLAEKSQFAC SMASELKATG GGWRRVRFHI RDQADAEMFK ALCPDDGVVI ACVSTMNEAD  180
DPWPHDESGL DLPIAAAGLC KGINAKEQTV DFSFWISAEV DTATNPSTPG WREWHERSRV  240
RERLTLEAFE GVRRLVRGDR GDALIGGHAV AEEGEMDARP PPVSPHDRTW FLAPAGKLHS  300
WYNAYEALHH VRRLHGPMRQ AMLKPPKDGM PRVRNVPAPP LSVEIAGNQK FVDFLVKNFN  360
EPQLAAIKWA AAHTLRSYER EGDQSHEDPF PFTLVQGPPG TGKTQTVWGI LNTLHCLLFQ  420
RYYKSIHDAI ARGTSRATGT EFTAALDDDD AEWLRSARED GEEDEDKDGG GFTVRDLYTF  480
LRDTTGVERG QTYGVYKPRI LVCAPSNAAV DNLLERVITK RFHQLTGELY TPAVVRVTAS  540
ETVVSDAVGP VTTSRLVEDL IEMGKSDGKK FDGARWNAEF HKHAKFVKEA GNFIKYKEHE  600
LVELTMASAE PRTVPAEGDD VEPGEEIDTR NQKSHGIIAE ILGMNENRNR AVTEMARLAY  660
LLDNLGPNAH HVTRNQRIDG KVDRQMKYDQ QRAIRKVRAA LEASFVDDAE IVFTTLTSSS  720
RKVFRQLTHG FDTVLIDEAA QANEMATLIP FLHGARRCVL VGDPQQLPST VISKHAQQVS  780
FQRSLFERFN ELGAEALLLS VQYRMHPEIR EFPSEEFYEG RLMDSACVIK RRPEPYQQKE  840
SGLGTYRIFD AHGLEERTTS NSVINHFEAI LVVCLYKKID KVLRDGTGES AEGKVSVVTP  900
YKEQVTVIRK AFEQLCGGEG AASRLRVQIN TIDGYQGQES DVIIFSTVRG SGDGGIGFLS  960
DIRRLNVAIT RAKKALYIVG RVGKLRAAQA GGEFTVWRDL VQNAMDRGCI VDDADPRVTF  1020
ADVVPVEEQE RAMSKLTKGN RRGVGFKPLK PRHPENPQPD NQRVCREWLA GKCLYGSDCR  1080
FAHEKRYDAK SKKLCRDFMM GKCHRGAECV FSHDTAMGGG GGGGGVSKYS ALPPPPSTSA  1140
RRDGDERQQP VIDDI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5mzn_A	4e-59	698	1010	396	698	Helicase SEN1,Helicase SEN1
6i59_A	4e-59	698	1010	396	698	Helicase SEN1
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Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP001329	0.0	CP001329.1 Micromonas sp. RCC299 chromosome 9, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002504539.1	0.0	superfamily I helicase
TrEMBL	C1EBX8	0.0	C1EBX8_MICCC; Superfamily I helicase
STRING	XP_002504539.1	0.0	(Micromonas sp. RCC299)

Link Out ? help Back to Top
Phytozome	61222
Entrez Gene	8246101

Publications ? help Back to Top
Worden AZ, et al. Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas. Science, 2009. 324(5924): p. 268-72 [PMID:19359590]