PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 61106
Common NameMICPUN_61106
Organism
Micromonas sp. RCC299
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas
Family C2H2
Protein Properties Length: 684aa    MW: 76979.2 Da    PI: 4.7208
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
61106genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.80.00017302322222
              EETTTTEEESSHHHHHHHHHH CS
  zf-C2H2   2 kCpdCgksFsrksnLkrHirt 22 
               Cp C+k F+++ + ++H ++
    61106 302 YCPVCKKKFKSQKQWENHEQS 322
              6*****************876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF465651.7E-285103IPR001623DnaJ domain
Gene3DG3DSA:1.10.287.1108.2E-29587IPR001623DnaJ domain
SMARTSM002713.0E-29867IPR001623DnaJ domain
CDDcd062577.88E-22964IPR001623DnaJ domain
PROSITE profilePS5007621.833975IPR001623DnaJ domain
PfamPF002268.1E-261072IPR001623DnaJ domain
PRINTSPR006259.2E-211129IPR001623DnaJ domain
PRINTSPR006259.2E-212944IPR001623DnaJ domain
PRINTSPR006259.2E-214767IPR001623DnaJ domain
PROSITE patternPS0063605271IPR018253DnaJ domain, conserved site
PRINTSPR006259.2E-216786IPR001623DnaJ domain
SMARTSM004512.1E-6298332IPR003604Zinc finger, U1-type
SuperFamilySSF576679.05E-13299343No hitNo description
PfamPF121711.5E-9301326IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.14301325IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280303325IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.159652680IPR007087Zinc finger, C2H2
SMARTSM003550.041652675IPR015880Zinc finger, C2H2-like
PfamPF128740.05653672No hitNo description
PROSITE patternPS000280654675IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 684 aa     Download sequence    Send to blast
MPPKYKMRCH YDVLGVNRDA DDAELKRAYR KLALEWHPDK NAHRQEEAEE RFKEVRGAYE  60
TLSDPNERAW YDSHREAILR AGKHAAGGED MRPEDEIDLM PYFTSNAFRG FGDDPGGFYQ  120
TYETLFAALD KQEQAASLAA GKDHFKASPA FGASDAPWTQ VKSFYQHWGL FATMKTFAWA  180
DEYNLAEAQN RKVRRLMDEE NKKLRRGEAR EFNDTVRQLI AFVRKRDKRF IAHSAEQAKL  240
EKARAAAAER KRLAAKKAKA EAASAYVEAD WAQAEAPEWL AREIEKEEEA KARKEARKQD  300
LYCPVCKKKF KSQKQWENHE QSKQHKAAVQ RLKEQMMEDE EVVKAALEDE DSQGESDDEE  360
SEGESDDEAR RNLRENLRNL NLDENDENDE AEKDEETEDE TDDEEERKDL YRNWVPKDKS  420
KNPRLASEDE EESEDESGSD EDEDAALARM MGHARTKAAT PRANTDSDNG DGSSSEDESE  480
DEDDALGRMM RTKRRVAFKE PVAADAGELS SGSGSDSETE SVTTVGRAER LARNKPRALL  540
KKGKLNARKK DVEAPVVPSN PLHLLDSDSD AIAEGDEDED DEGAARAAAQ RASMFDVLDA  600
EVVDDGAGVT PAPDDDDDDD GAQEEAAAKK PNRRAKKKGF EKPDADAGAN KIRCQLCKMT  660
FASGNALHKH LKDAHSGVHK KKR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2dmx_A5e-16772873DnaJ homolog subfamily B member 8
2ej7_A4e-16774875HCG3 gene
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1628637KKPNRRAKKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0013290.0CP001329.1 Micromonas sp. RCC299 chromosome 9, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002504171.10.0predicted protein
TrEMBLC1EBK70.0C1EBK7_MICCC; Uncharacterized protein
STRINGXP_002504171.10.0(Micromonas sp. RCC299)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP443077
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74250.12e-68DNAJ heat shock N-terminal domain-containing protein
Publications ? help Back to Top
  1. Worden AZ, et al.
    Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.
    Science, 2009. 324(5924): p. 268-72
    [PMID:19359590]