PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	27	7.7e-09	190	212	2	25
-S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaH 25 + + C ++r G+C +Gd C+FaH 60560 190 GKPVCYAYQR-GECTRGDACRFAH 212 5789****.*********** PP
2	zf-CCCH	25	3.2e-08	228	249	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C f+r G+C +Gd+C+F+H+ 60560 228 PICYAFQR-GECDRGDSCRFSHD 249 79****.***********6 PP
3	zf-CCCH	26.5	1.1e-08	260	282	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 ++C f++ G+C +Gd C+F+H+p 60560 260 APCYAFQK-GECTRGDACRFSHDP 282 79****.***********86 PP
4	zf-CCCH	24.1	6.5e-08	292	313	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C f+r G+C +Gd C+F+H 60560 292 APCYAFQR-GECDRGDACRFSHE 313 69****.***********5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13451	1.9E-21	137	182	IPR025306	Probable zinc-binding domain
PROSITE profile	PS50103	15.319	188	215	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	3.3E-6	188	214	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	4.71E-5	190	213	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	9.9E-7	190	212	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	4.5E-5	193	214	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.61	224	251	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	2.4E-6	224	250	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	5.36E-5	225	249	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	5.3E-6	228	249	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.7E-4	229	250	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	16.183	256	283	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	4.97E-5	257	281	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.3E-5	257	282	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.7E-6	260	282	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	2.4E-4	261	282	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.587	288	314	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	4.7E-5	288	314	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	9.0E-6	292	313	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 315 aa Download sequence Send to blast
MSCQLPPRFC WSSVGILRSI EHNRSRQSPP AEHTRPVEDF TQFLRTTALP LSRRTPPRTV 60 AMAKEKKEKK EKKEKKEKKE KKEKRPAEDD AEDEPDAKKT KEEEPEVEEA NDDDEDDGFK 120 VHKKSAADAN PLSKTYEDIT LNCRDCNAEF VFTAGEQEFY NSKGWENQPT RCTECKNAKK 180 ARFGEGPSSG KPVCYAYQRG ECTRGDACRF AHEEGGGGDS RPPSRGAPIC YAFQRGECDR 240 GDSCRFSHDA NASTPQKSSA PCYAFQKGEC TRGDACRFSH DPNAEAPQRS SAPCYAFQRG 300 ECDRGDACRF SHEQ*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP001575	0.0	CP001575.1 Micromonas sp. RCC299 chromosome 8, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002508137.1	0.0	predicted protein
TrEMBL	C1FFL8	0.0	C1FFL8_MICCC; Uncharacterized protein
STRING	XP_002508137.1	0.0	(Micromonas sp. RCC299)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP3507	13	14

Link Out ? help Back to Top
Phytozome	60560
Entrez Gene	8245770

Publications ? help Back to Top
Worden AZ, et al. Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas. Science, 2009. 324(5924): p. 268-72 [PMID:19359590]