PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 60445
Common NameMICPUN_60445
Organism
Micromonas sp. RCC299
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas
Family C3H
Protein Properties Length: 599aa    MW: 65320.2 Da    PI: 10.6562
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
60445genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.88.1e-08142162526
              --SGGGGTS--TTTTT-SS-SS CS
  zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
               C  f+r G C +Gd C+FaH+
    60445 142 VCYAFQR-GRCTRGDECRFAHV 162
              5999***.*************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.971137164IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-4139163IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.1E-6142166IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.29E-5142166IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-5142162IPR000571Zinc finger, CCCH-type
SMARTSM003160.7191278IPR022967RNA-binding domain, S1
SuperFamilySSF502499.8E-6193283IPR012340Nucleic acid-binding, OB-fold
PROSITE profilePS5012611.269193278IPR003029S1 domain
Gene3DG3DSA:2.40.50.1402.6E-7195290IPR012340Nucleic acid-binding, OB-fold
SuperFamilySSF502497.03E-6327400IPR012340Nucleic acid-binding, OB-fold
SMARTSM003160.28328415IPR022967RNA-binding domain, S1
PROSITE profilePS501269.897330415IPR003029S1 domain
Gene3DG3DSA:2.40.50.1403.6E-7332424IPR012340Nucleic acid-binding, OB-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 599 aa     Download sequence    Send to blast
MLGDGADDDL GDRDGGFGRR DGYRSRSPRG GGGSRSRSRS RSRGAKRDFP RSWSRSRSRS  60
PRRRRRGSRS RSRSRSRSGG GRGYARDDRR RGRRRSRSAS RSPRGARARE VPPPPPRDGG  120
RHRGDPRDSQ APLSTAGRGP GVCYAFQRGR CTRGDECRFA HVISDVPPPP PGARSGGNRG  180
GDASAATLHP PLHSIQKGRV ATVRPFGLFV RMNGFVRDGL VHCANVSDEL TFRREDGDDA  240
KVMAMEYFHP RDSEVYAKVV EIRRDGYSGD VKVGLSMKLV DQSSGEDLDP DHSRAKALLE  300
GGFGWNGHGN GDGDGHRDSR NLSDDPPALN STHRAVVKEV KPYGVFVSMA GFRRNGLVPH  360
HQVSDYLEFS REDTDEDKVK ALEGAVGKGD EAWVKVVELK EPNYPGEGPV KVTCSIKLCD  420
QRDGSDLDPG CSRYFPQGER GGDRDGVGGN IPRRVGDGAG EAVKRGGVID WGHHLGDVKQ  480
YGDGGRYDLV TDDVGEGLER REDGQTGVPQ GRPGHGPPRT VPPPPSGAAP ASARDQQIGS  540
VEEALAILAK HKKEKKERKE KKAKKSKKSS KKERKERKEK KGKRSRRDLS DSSSDSES*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16876RSRSRSRSR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0015750.0CP001575.1 Micromonas sp. RCC299 chromosome 8, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002508078.10.0predicted protein
TrEMBLC1FFA30.0C1FFA3_MICCC; Uncharacterized protein
STRINGXP_002508078.10.0(Micromonas sp. RCC299)
Publications ? help Back to Top
  1. Worden AZ, et al.
    Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.
    Science, 2009. 324(5924): p. 268-72
    [PMID:19359590]