PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 60155
Common NameMICPUCDRAFT_60155
Organism
Micromonas pusilla CCMP1545
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas; Micromonas pusilla
Family ERF
Protein Properties Length: 509aa    MW: 50762.6 Da    PI: 9.779
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
60155genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP246.87.3e-151021411355
    AP2  13 grWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
             +W+AeIrdp   + r +r +lg+f+taeeAa+a++aa++ ++g
  60155 102 RSWAAEIRDP---N-RgARLWLGTFDTAEEAARAYDAAARHIRG 141
            68*******8...3.35***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.42E-1248149No hitNo description
SMARTSM003805.0E-2449155IPR001471AP2/ERF domain
PROSITE profilePS5103219.4849149IPR001471AP2/ERF domain
PRINTSPR003675.3E-105061IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-16100149IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.3E-24100149IPR001471AP2/ERF domain
PfamPF008472.6E-8102141IPR001471AP2/ERF domain
PRINTSPR003675.3E-10115131IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0009873Biological Processethylene-activated signaling pathway
GO:0034059Biological Processresponse to anoxia
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071456Biological Processcellular response to hypoxia
GO:0071497Biological Processcellular response to freezing
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 509 aa     Download sequence    Send to blast
MSAAVAGNMH SPTDSLPPAN VEDDDLDDLD DDDDDPKAVT KTKKTTSSIY RGVRQRPWGR  60
EPLDDWHRGA RKLSPRKYRD VVEFSSVSDA LPRSLPRAVP SRSWAAEIRD PNRGARLWLG  120
TFDTAEEAAR AYDAAARHIR GPNARTNFQL APGEVPPPFV LPDPPTGGRG GRGRGDGPDS  180
PGGGRGGRGG RGGPHVAKKG RGAGAGMPKT GVGLGGGGYG VGGGGGGGFL GAFAGAHSNA  240
FKPSVVGASH GRFNATAHGG THTANDLSAL VNANLALAQQ NLSMAGAHGG HGAGAGSGSD  300
GGFIRLGGAG VGGGNHHHHH VVGEIPRIHN SKRERAPSNP FLGTSFGVAG SFGSVFGHDY  360
LSSTPDGGLG FPSHFGSSPG AGGELHGGSH HGRSGGGASH EGSHHGRSGG GGLGGGGFSL  420
GAAIKDDFEV GSLGAAGGLD DSVMPIGSME LGSPLDSFGD LMGSLPKGGS LGLKNSLGGG  480
NKNGAGGLPF GRSSQGDGRT ATDALKMR*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00230DAPTransfer from AT1G72360Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003060393.10.0erf-like protein
TrEMBLC1MXG90.0C1MXG9_MICPC; Erf-like protein
STRINGXP_003060393.10.0(Micromonas pusilla)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1321540
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11140.19e-11cytokinin response factor 1
Publications ? help Back to Top
  1. Worden AZ, et al.
    Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.
    Science, 2009. 324(5924): p. 268-72
    [PMID:19359590]