PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 59897
Common NameMICPUN_59897
Organism
Micromonas sp. RCC299
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas
Family C3H
Protein Properties Length: 496aa    MW: 53429.5 Da    PI: 6.8348
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
59897genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH185.1e-062546426
             ---SGGGGTS--TTTTT-SS-SS CS
  zf-CCCH  4 elCrffartGtCkyGdrCkFaHg 26
             ++C +fa+ G+C +Gd C + H+
    59897 25 RPCWNFAK-GQCAFGDACAYLHD 46
             6899****.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.1642148IPR000571Zinc finger, CCCH-type
SMARTSM003560.00292247IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.3E-42546IPR000571Zinc finger, CCCH-type
PROSITE profilePS5122123.21785482IPR004344Tubulin-tyrosine ligase/Tubulin polyglutamylase
PfamPF031331.9E-26139318IPR004344Tubulin-tyrosine ligase/Tubulin polyglutamylase
SuperFamilySSF560593.16E-9183294No hitNo description
SuperFamilySSF560593.16E-9360440No hitNo description
PfamPF031336.5E-8414447IPR004344Tubulin-tyrosine ligase/Tubulin polyglutamylase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006464Biological Processcellular protein modification process
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 496 aa     Download sequence    Send to blast
MFRAPEPSRQ TGASAAKGGR RLSGRPCWNF AKGQCAFGDA CAYLHDDVAS DSRGPARCRS  60
DETTSTSDRD GAVDEPRVPL RYFTHKSRAQ LGADPGRSLL ARVLERDGVF EPTRDVSSCA  120
LFWGCASPTG PLLANLPPDA FVNHFPGTTA ITHKHTLAMM LRRHPEGDAV APRTFVLPAE  180
ANEFAAFDDA DDCEKGGAGW IVKRAVGGEG RGTIVARTAR EALERTRGAD RGYRACSRHA  240
ETWVAQRYVR DPLTLAPRSG SDRRKVDLRA YALLTRWDPN DGTTRAYVHR DGLVRFAAAP  300
WDPSDSSSLA VHLTNNAAAT ARTHEGGAEG GAEGGADDRV TWDPDAHFKR NWSFETLASE  360
LDAELGVGSY ERLWEGVRRC ARAALASLPR RGDWGDLGGN ESLSVGDDGR NLRRFELLGL  420
DLLVDERLRV WLLEVNSAPT LAAGTKLGGR VSGTHHRVKA GLLADAMNLL GVGLEDAGGA  480
EEEVERAALG GFQLL*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0013280.0CP001328.1 Micromonas sp. RCC299 chromosome 7, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002503862.10.0predicted protein
TrEMBLC1E9Z90.0C1E9Z9_MICCC; Uncharacterized protein
STRINGXP_002503862.10.0(Micromonas sp. RCC299)
Publications ? help Back to Top
  1. Worden AZ, et al.
    Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.
    Science, 2009. 324(5924): p. 268-72
    [PMID:19359590]