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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
59628 |
Common Name | SELMODRAFT_59628 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
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Family |
B3 |
Protein Properties |
Length: 127aa MW: 14607.8 Da PI: 10.5453 |
Description |
B3 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
59628 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | B3 | 80 | 2.4e-25 | 13 | 113 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97
f kv tpsdv+k++rlv+pk++ae+ ++++ l+++d s + W ++++y+ +s++yvltkGW +Fvk+++L++gD++ F++ + el++ +
59628 13 FYKVVTPSDVGKLNRLVIPKQHAERWfpldpcL-R-KKGRLLSFQDvVSRELWWFRYSYWSSSQSYVLTKGWIRFVKDKDLQAGDIISFERG--ARHELYINCR 112
789********************999*998752.2.2566899999778899**************************************43..5666677776 PP
- CS
B3 98 r 98
+
59628 113 K 113
6 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 127 aa
Download sequence Send
to blast |
ATGGGAAAHE HLFYKVVTPS DVGKLNRLVI PKQHAERWFP LDPCLRKKGR LLSFQDVVSR 60 ELWWFRYSYW SSSQSYVLTK GWIRFVKDKD LQAGDIISFE RGARHELYIN CRKRPTSGRA 120 AFAPLPG
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
5os9_A | 4e-46 | 7 | 118 | 2 | 117 | B3 domain-containing transcription factor NGA1 |
5os9_B | 4e-46 | 7 | 118 | 2 | 117 | B3 domain-containing transcription factor NGA1 |
Search in ModeBase |
Functional Description ? help
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Source |
Description |
UniProt | Regulates lateral organ growth. Functionally redundant with NGA1, NGA2 and NGA4. {ECO:0000269|PubMed:16603651}. |
UniProt | Regulates lateral organ growth. Functionally redundant with NGA2, NGA3 and NGA4. {ECO:0000269|PubMed:16603651}. |
Publications
? help Back to Top |
- Banks JA, et al.
The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] - Lee BH, et al.
The Arabidopsis thaliana NGATHA transcription factors negatively regulate cell proliferation of lateral organs. Plant Mol. Biol., 2015. 89(4-5): p. 529-38 [PMID:26433582] - Lozano-Sotomayor P, et al.
Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana. Plant J., 2016. 88(3): p. 437-451 [PMID:27402171] - Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
Active suppression of a leaf meristem orchestrates determinate leaf growth. Elife, 2017. [PMID:27710768] - Sasnauskas G,Manakova E,Lapėnas K,Kauneckaitė K,Siksnys V
DNA recognition by Arabidopsis transcription factors ABI3 and NGA1. FEBS J., 2018. 285(21): p. 4041-4059 [PMID:30183137] - Sato H, et al.
Arabidopsis thaliana NGATHA1 transcription factor induces ABA biosynthesis by activating NCED3 gene during dehydration stress. Proc. Natl. Acad. Sci. U.S.A., 2018. 115(47): p. E11178-E11187 [PMID:30397148]
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