PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 59110
Common NameMICPUN_59110
Organism
Micromonas sp. RCC299
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas
Family MYB_related
Protein Properties Length: 489aa    MW: 53339.5 Da    PI: 5.7816
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
59110genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.62.4e-07436484347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT....TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg....kgRtlkqcksrwqky 47 
                      rWTt  +e l ++v  +G g+W+tI +         Rt  ++k++w+ +
            59110 436 RWTTAQEEELRRLVGVHGVGSWATILEAGRdmfgADRTSVNLKDKWRVL 484
                      9************************98777788899**********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.783429485IPR017877Myb-like domain
SuperFamilySSF466891.08E-9431485IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.7E-8436486IPR009057Homeodomain-like
CDDcd116601.15E-13436486No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 489 aa     Download sequence    Send to blast
MHHSQEATDT ALDWCIELIS QSNVLEVGAK YAILDALKDK ISSGEFSPTT RIRMYVESIS  60
RLTASEESGP FMRLRPENVN EVFQSLVKMG DVAHALGDDS IPMPTITLTA QTYAETMLTH  120
LRPPYRDVEN FAESVDNYDL DDEDFQTASP WLDVEALENI RVDLKKQAAR VTDDRCDGIL  180
RRWNTAKDTL VELAKYCGEV LEAMGPSFLE RVAADFRSGR YAPPSHDGVL IPEDAIPEDA  240
RAKRRERELL EAGRVLREAF DKKPNSSSPS DLKNKRKAPA DDVEAAAVRR NVTAFEKLRA  300
ANAAVADPLK EALRASDAAG AQGQGGRRTE EAAWNALAAE YEAGTGSDQP SDESPAAKAA  360
KARAANRDAA DDGKKVVIRP HHRGATARTV DWDSRGDGGA VSDVSTPPTT RKAGAPGVIG  420
ARTTRVGTSG RKAYTRWTTA QEEELRRLVG VHGVGSWATI LEAGRDMFGA DRTSVNLKDK  480
WRVLTKAR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1261276KKPNSSSPSDLKNKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0013270.0CP001327.1 Micromonas sp. RCC299 chromosome 6, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002503120.10.0predicted protein
TrEMBLC1E7R40.0C1E7R4_MICCC; Uncharacterized protein
STRINGXP_002503120.10.0(Micromonas sp. RCC299)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP650666
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17460.23e-07TRF-like 3
Publications ? help Back to Top
  1. Worden AZ, et al.
    Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.
    Science, 2009. 324(5924): p. 268-72
    [PMID:19359590]