PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 58347
Common NameMICPUN_58347
Organism
Micromonas sp. RCC299
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas
Family MYB_related
Protein Properties Length: 377aa    MW: 40725.1 Da    PI: 10.4687
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
58347genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding361.6e-1174124146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46 
                      + +W++eE+e l ++vk++G g W+ I +        + R+  ++k++w++
            58347  74 KTKWSPEEEEALRKGVKKYGAGKWRFIQKDPVlgkilNQRSNVDLKDKWRN 124
                      579***************************9999***99***********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.13569130IPR017930Myb domain
SuperFamilySSF466892.99E-1671130IPR009057Homeodomain-like
SMARTSM007178.9E-873128IPR001005SANT/Myb domain
PfamPF002491.3E-874125IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-1574125IPR009057Homeodomain-like
CDDcd116601.89E-2076125No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0000785Cellular Componentchromatin
GO:0005730Cellular Componentnucleolus
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043047Molecular Functionsingle-stranded telomeric DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MHSSSVRKNT KKKWGVVNGR SCPILPDVSL ERNNEPILPA TRNLSHVRVL HCVRRGATAR  60
SRRPPASLIM GVPKTKWSPE EEEALRKGVK KYGAGKWRFI QKDPVLGKIL NQRSNVDLKD  120
KWRNMYPGHS TADPNPDSVR SRPANTRVDA KISSPLGSHP SCPFGDESFW FFFTLASRTD  180
SSARPASPSQ DDDDRKSGSR SRGKSGGGGG RAASDSGGSH HRRGGSAKDH PAKRAGGSGK  240
DNKDHKDHKD HKRRRHEKTA GDANGTHGTH GTHGAKGSEQ GSEPYLFLVN GQYRTAEEVT  300
RDAARAVREA ERAAAAAEEA AEEAELCERE AWEAERLANE LLEEAERQKR ASDAAAAATK  360
MGPAAAAAGA STIFAV*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00652PBMTransfer from LOC_Os01g51154Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0013260.0CP001326.1 Micromonas sp. RCC299 chromosome 5, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002502013.10.0predicted protein
TrEMBLC1E5K40.0C1E5K4_MICCC; Uncharacterized protein
STRINGXP_002502013.10.0(Micromonas sp. RCC299)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP3956912
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49850.11e-19telomere repeat binding factor 3
Publications ? help Back to Top
  1. Worden AZ, et al.
    Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.
    Science, 2009. 324(5924): p. 268-72
    [PMID:19359590]