PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

57866

Common Name

MICPUN_57866

Organism

Micromonas sp. RCC299

Taxonomic ID

296587

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas

Family

MYB_related

Protein Properties

Length: 690aa MW: 72365.3 Da PI: 10.2748

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
57866	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	29.6	1.6e-09	26	68	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +rWT++E++++ a k G++ +++Ia+ ++ +R + q++ ++++ 57866 26 DRWTPWEEKQFFTALKDVGSN-FDKIAEIIQ-TRNRSQVRTFYNT 68 69***************99.*****.********985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	7.65E-10	20	74	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.6E-6	21	72	IPR009057	Homeodomain-like
Pfam	PF15963	1.4E-8	23	94	No hit	No description
PROSITE profile	PS51293	9.831	23	74	IPR017884	SANT domain
SMART	SM00717	1.2E-9	24	72	IPR001005	SANT/Myb domain
CDD	cd00167	1.61E-7	27	70	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 690 aa Download sequence Send to blast
MNVSFFIIFP IIFVRAGERK PTKSQDRWTP WEEKQFFTAL KDVGSNFDKI AEIIQTRNRS 60 QVRTFYNTEV KRINTVLAPL GVQVDPSDAE EVHTAMHSWH SMKDKLGPGG SFQELCKKPQ 120 NRNLFAWDLK KELDKSVWAQ GKKEAKLKSL GLLPAVAGDA SGKVLGVMPV KTTANRGRPK 180 GSGIRTKNTC KADSPAGRTK STGRKAARRG SVSPNAALRA AAATAAKDDS VAKEQKERLM 240 LQLFPIDTST RAALVAGGFN PHLELTFRAK KSVTGLMQHL ITKWAAALPH LPAGLDKETA 300 VLQLYPFEAA SASDAKGAWN HRHEGVTATD IFDAIGRPAA FRVRYGWVPS EEAAVRPHLA 360 PPPPVYQQSL ARSRSRTPSP PNLSPRKRSA EEMTVAHPSF CQAPVQAGSF AGMFGGGNAS 420 AVGSVFGSDL ALFGGVGGAG AGTGADGGVV GVGAEDFTLP GFGADFSNMC REMGLGDVDA 480 SRGLGGPSAG LTAARHNGIA AGAQLASAAP DQIKGYSERQ VISEFGGGDV TVGTMLENDA 540 MFSLTQMLGD VPEGNISHAG APVAVPSGPS SFAGMFAGGS IADVIGMPRQ KLKQPGIAGK 600 PRGGEKKPRQ PYNKKPANLG QPYVSSLVMT GPAVHGAIVP GYINNGKGFV PVQQQPVESA 660 AAYYPHMAPQ GDMAANMAKE AAASASLGA*

Sequence ? help Back to Top

Protein Sequence Length: 690 aa Download sequence Send to blast

MNVSFFIIFP IIFVRAGERK PTKSQDRWTP WEEKQFFTAL KDVGSNFDKI AEIIQTRNRS  60
QVRTFYNTEV KRINTVLAPL GVQVDPSDAE EVHTAMHSWH SMKDKLGPGG SFQELCKKPQ  120
NRNLFAWDLK KELDKSVWAQ GKKEAKLKSL GLLPAVAGDA SGKVLGVMPV KTTANRGRPK  180
GSGIRTKNTC KADSPAGRTK STGRKAARRG SVSPNAALRA AAATAAKDDS VAKEQKERLM  240
LQLFPIDTST RAALVAGGFN PHLELTFRAK KSVTGLMQHL ITKWAAALPH LPAGLDKETA  300
VLQLYPFEAA SASDAKGAWN HRHEGVTATD IFDAIGRPAA FRVRYGWVPS EEAAVRPHLA  360
PPPPVYQQSL ARSRSRTPSP PNLSPRKRSA EEMTVAHPSF CQAPVQAGSF AGMFGGGNAS  420
AVGSVFGSDL ALFGGVGGAG AGTGADGGVV GVGAEDFTLP GFGADFSNMC REMGLGDVDA  480
SRGLGGPSAG LTAARHNGIA AGAQLASAAP DQIKGYSERQ VISEFGGGDV TVGTMLENDA  540
MFSLTQMLGD VPEGNISHAG APVAVPSGPS SFAGMFAGGS IADVIGMPRQ KLKQPGIAGK  600
PRGGEKKPRQ PYNKKPANLG QPYVSSLVMT GPAVHGAIVP GYINNGKGFV PVQQQPVESA  660
AAYYPHMAPQ GDMAANMAKE AAASASLGA*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP001325	0.0	CP001325.1 Micromonas sp. RCC299 chromosome 4, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002501770.1	0.0	predicted protein
TrEMBL	C1E408	0.0	C1E408_MICCC; Uncharacterized protein
STRING	XP_002501770.1	0.0	(Micromonas sp. RCC299)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G36960.3	1e-16	TSL-kinase interacting protein 1

Link Out ? help Back to Top
Phytozome	57866
Entrez Gene	8242674

Publications ? help Back to Top
Worden AZ, et al. Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas. Science, 2009. 324(5924): p. 268-72 [PMID:19359590]