PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 57579
Common NameMICPUN_57579
Organism
Micromonas sp. RCC299
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas
Family C3H
Protein Properties Length: 334aa    MW: 35820.7 Da    PI: 10.7982
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
57579genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH246.9e-08230251426
              ---SGGGGTS--TTTTT-SS-SS CS
  zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                C++f+  G C +Gd+C+F+H+
    57579 230 DACHDFSV-GRCTRGDKCRFSHD 251
              57******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF547912.19E-8113193IPR004088K Homology domain, type 1
SMARTSM003221.4E-4117192IPR004087K Homology domain
PROSITE profilePS5008410.525118187IPR004088K Homology domain, type 1
CDDcd001051.88E-4120174No hitNo description
PfamPF000133.0E-6121188IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.109.4E-7122197IPR004088K Homology domain, type 1
PROSITE profilePS5010315.075226253IPR000571Zinc finger, CCCH-type
SMARTSM003562.3E-4226252IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.33E-5227251IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.9E-5229251IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-5230251IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MESTGLRMFS GSLPRAGMPS RGVEAPLSIR TFRNRFFPSV LAESLVVVAR SRAIFSTLSS  60
QGSTRKKLAA ASGCILEYIG DVAVMAGNRD ERRRCWDYLN WLLKQRKGAL SVDPKGRDDV  120
LELPVPSGKA GRLSGKGGNV LRSIEKETST FCFLTDHRAA ADGESRDELM LIFGRDKRDR  180
YKAMDLMEDA MEGKYQPKGG GGGGGDRGGR DARGGGDRGG RGGGGNKRSD ACHDFSVGRC  240
TRGDKCRFSH DVASAGGTRG GGRSDRDASP RRDGRGGPDR GRGRRDRDRD RDRRGPYGDG  300
RGGGGGSRGG ERGGGRDEEA GARPGEDPRY DRR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1218224GGRGGGG
2307315RGGERGGGR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0013250.0CP001325.1 Micromonas sp. RCC299 chromosome 4, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002501250.10.0predicted protein
TrEMBLC1E3740.0C1E374_MICCC; Uncharacterized protein
STRINGXP_002501250.10.0(Micromonas sp. RCC299)
Publications ? help Back to Top
  1. Worden AZ, et al.
    Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.
    Science, 2009. 324(5924): p. 268-72
    [PMID:19359590]