PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

56966

Common Name

MICPUN_56966

Organism

Micromonas sp. RCC299

Taxonomic ID

296587

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas

Family

bHLH

Protein Properties

Length: 383aa MW: 40311.1 Da PI: 5.2605

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
56966	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	43.3	6.7e-14	130	183	1	54
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +r++h + E++RRdriN ++eLr l+P + +++ ++ sK +L+ +++ I L 56966 130 QRVSHGASEKQRRDRINAMIDELRMLVPGQAGGGEGRRSKYIVLQDTINMIAAL 183 79*************************669*****************887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.22E-14	126	199	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.32E-11	127	188	No hit	No description
PROSITE profile	PS50888	14.507	129	183	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	9.1E-12	130	183	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.0E-13	130	186	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.0E-7	135	189	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 383 aa Download sequence Send to blast
MDDHPGGLAP LFDDAGKDRT YTDTELQELL SFVENMDNAT SADELAGGLN HVGLGLAPAN 60 AGLSHPVPHA PVLPMRFNEQ GISLQFQPGP TSARGRGRGG RGGGRGAAPA VGNFEAPMSA 120 SPAIEDDGSQ RVSHGASEKQ RRDRINAMID ELRMLVPGQA GGGEGRRSKY IVLQDTINMI 180 AALKAKCQAQ ERELVALRAA GASEGASGGV QTQDQQQQMM MLMGQDGQGL DPVREESIRN 240 PANGTNSTLN SGQTISVAVE MGEEICYVKI KAPDRQGLLQ DILNALHALP MTVQRAVVTT 300 DSENGVVFVT DIFELKINTA IPVEQRISPE DVKTHIHQSM HASFLAYENP ELYARKRKGT 360 QGGVSGSDSG GSGIGSGVRA AG*

Sequence ? help Back to Top

Protein Sequence Length: 383 aa Download sequence Send to blast

MDDHPGGLAP LFDDAGKDRT YTDTELQELL SFVENMDNAT SADELAGGLN HVGLGLAPAN  60
AGLSHPVPHA PVLPMRFNEQ GISLQFQPGP TSARGRGRGG RGGGRGAAPA VGNFEAPMSA  120
SPAIEDDGSQ RVSHGASEKQ RRDRINAMID ELRMLVPGQA GGGEGRRSKY IVLQDTINMI  180
AALKAKCQAQ ERELVALRAA GASEGASGGV QTQDQQQQMM MLMGQDGQGL DPVREESIRN  240
PANGTNSTLN SGQTISVAVE MGEEICYVKI KAPDRQGLLQ DILNALHALP MTVQRAVVTT  300
DSENGVVFVT DIFELKINTA IPVEQRISPE DVKTHIHQSM HASFLAYENP ELYARKRKGT  360
QGGVSGSDSG GSGIGSGVRA AG*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	97	105	RGGRGGGRG

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP001324	0.0	CP001324.1 Micromonas sp. RCC299 chromosome 3, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002500528.1	0.0	predicted protein
TrEMBL	C1E1R5	0.0	C1E1R5_MICCC; Uncharacterized protein
STRING	XP_002500528.1	0.0	(Micromonas sp. RCC299)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP3455	10	13

Link Out ? help Back to Top
Phytozome	56966
Entrez Gene	8241719

Publications ? help Back to Top
Worden AZ, et al. Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas. Science, 2009. 324(5924): p. 268-72 [PMID:19359590]