PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 56817
Common NameMICPUN_56817
Organism
Micromonas sp. RCC299
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas
Family C3H
Protein Properties Length: 484aa    MW: 52414.8 Da    PI: 10.5603
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
56817genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH192.6e-062122251326
              S--TTTTT-SS-SS CS
  zf-CCCH  13 GtCkyGdrCkFaHg 26 
              G Ck+Gd C+F H+
    56817 212 GKCKFGDECQFKHP 225
              99***********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902298.63E-5204226IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.136204227IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.0E-5205229IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 484 aa     Download sequence    Send to blast
MGSSVNAEKK AKKEKKDKKD TKDKKEAKSD AGKKDASKKT AAAAAQPMGK AAKKKALLDW  60
FHGALKGDTD GARADFLKAR DYVAVANVIR KHARDPKLKG AHADAIKLLD NKGHFLNIVD  120
VVVKDGAADA STHWDKIKAH HRAKFEKAGG KDGVAEKKRA AREAKEAFKV LQKERAEREA  180
KQKELAADRK EYRQKMDEVR LKGACLDWCN LGKCKFGDEC QFKHPDELKG TLVALANKIK  240
AKDVGGKKGK EREETERRKK RKAAKKEKER DGEGGGDSDS DADDGGGGDS ESEDSFDRAA  300
QAEDEYDSED FDSDLDVDVD KSTGAKTKRK KRKDKVLSVL PGDDGSDSDG DDEDLPRMVR  360
LRKQKQREEA EWAKAERAAK KAKQAKILEK VKAARAAKGL EMPKRQGSRD RSGGRGGGGR  420
GGGGGRGGRG GRGGRGGRGG RGGRGEKRSF DGQASGEKRK KKPRHADGRH AKHAAAHAAR  480
TAA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1247259KGKEREETERRKK
2328333RKKRKD
3328334RKKRKDK
4414425RGGGGRGGGGGR
5417424GGRGGGGG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0013240.0CP001324.1 Micromonas sp. RCC299 chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002500888.10.0predicted protein
TrEMBLC1E1C10.0C1E1C1_MICCC; Uncharacterized protein
STRINGXP_002500888.10.0(Micromonas sp. RCC299)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP468333
Publications ? help Back to Top
  1. Worden AZ, et al.
    Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.
    Science, 2009. 324(5924): p. 268-72
    [PMID:19359590]