PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 56787
Common NameMICPUN_56787
Organism
Micromonas sp. RCC299
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas
Family YABBY
Protein Properties Length: 416aa    MW: 46824.6 Da    PI: 8.3525
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
56787genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY31.46e-1024233276165
  YABBY  76 kveeenlksnvekeesastsvsseklsenedeevprvppvirPPekrq.rvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPk 165
                e ++++ ++e + +++v  + ++e+e ee+p      +  ekr  r+P+ +n f++  + ++k+ nP +s ++ f++ a  Wa  P+
  56787 242 DEMYERMRKTPVEEAEVKEEVIEFGVKEEEVEETPVGTSLKKKKEKRDpRAPTKFNEFMRTKVAQVKSDNPTMSPKDIFAMCAAMWASAPE 332
            3344445555555555566666666799999999999999*******77**************************************9886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046909.1E-8255332IPR006780YABBY protein
SuperFamilySSF470951.83E-8276335IPR009071High mobility group box domain
CDDcd000843.07E-4290332No hitNo description
Gene3DG3DSA:1.10.30.105.2E-5291335IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MTQLELDIVG DSAAKARLEV SGYFGDPSEQ SVAFRCFLKD MKFTYDGKRR VWDGECTVLR  60
ARRLLAGAKQ EGFYFLTANW DMASAKLHSL FGERLHEVFE EEADDQWPSY DHSCDHVLSC  120
DDDPAAANAI AGGDSDNWTS RYRRVYFVPI VRNKMATDVA GRRSEKTYVS LEAIGRGAFN  180
VKDGLKACKF RWDGEVWHYD RDTDARARKS FRQTARDVRA QFALHHRDGI PVRLTPASDE  240
ADEMYERMRK TPVEEAEVKE EVIEFGVKEE EVEETPVGTS LKKKKEKRDP RAPTKFNEFM  300
RTKVAQVKSD NPTMSPKDIF AMCAAMWASA PENPKNRNMA PPPNRKRAAP AASHAGTMMS  360
EARSRPRVRR EPDAEATSVK REQSPEPSEA TAQFAAGAPN TPGLATRTRR RSSIA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0013240.0CP001324.1 Micromonas sp. RCC299 chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002500439.10.0YABBY like transcription factor
TrEMBLC1E1910.0C1E191_MICCC; YABBY like transcription factor
STRINGXP_002500439.10.0(Micromonas sp. RCC299)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP925545
Publications ? help Back to Top
  1. Worden AZ, et al.
    Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.
    Science, 2009. 324(5924): p. 268-72
    [PMID:19359590]