PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 56781
Common NameMICPUCDRAFT_56781
Organism
Micromonas pusilla CCMP1545
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas; Micromonas pusilla
Family MYB_related
Protein Properties Length: 413aa    MW: 42318.7 Da    PI: 11.0339
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
56781genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.63.9e-10555146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                     + +W+ eE++ l+++vk++G+g W++I +        + R+  ++k++w++
            56781  5 KTKWSVEEEDALKRGVKKYGPGKWRLIQKDDVlgktlNLRSNVDLKDKWRN 55
                     579************************987554588879**********99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.754161IPR017930Myb domain
SuperFamilySSF466891.01E-14259IPR009057Homeodomain-like
SMARTSM007172.4E-9459IPR001005SANT/Myb domain
PfamPF002494.9E-8556IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.1E-14556IPR009057Homeodomain-like
CDDcd116603.14E-18756No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0000785Cellular Componentchromatin
GO:0005730Cellular Componentnucleolus
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
GO:0033613Molecular Functionactivating transcription factor binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0070491Molecular Functionrepressing transcription factor binding
GO:1990841Molecular Functionpromoter-specific chromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MGAPKTKWSV EEEDALKRGV KKYGPGKWRL IQKDDVLGKT LNLRSNVDLK DKWRNMYPNN  60
GSSEYTVRAA TAPLPSSLRS SRDRRRVDAA AAAAAALASA ARPPAARSPP GLARPRASGG  120
ASLPLRDRRA DAAATSRATT ATRLIILGAV DSIPFDSFRV APPRSPLRPT PSSSSPPRRA  180
QDDDDKTSDG SRGATKSESG GRRGGKGRSS GGGGSRGGGG GGGGGSKKTS SASEKNSGGA  240
RSHHRKDKSE VKSEKGAGGG GSAGGDKSKR DRGGNDGNGG NAKKKQKNAG GAGGRASGGA  300
APASTATMTP AEAPYLFLVN GQYRTAEEVN KDAARAVRDA EKAAALAEEA AREAETYEKE  360
AWEAERLANA LVESAERQKQ RMEALERQKR AGAGAGGLKT PTANGGEGGV PA*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00652PBMTransfer from LOC_Os01g51154Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003057517.10.0single myb histone protein
TrEMBLC1MN490.0C1MN49_MICPC; Single myb histone protein
STRINGXP_003057517.10.0(Micromonas pusilla)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP3956912
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.32e-19telomere repeat binding factor 1
Publications ? help Back to Top
  1. Worden AZ, et al.
    Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.
    Science, 2009. 324(5924): p. 268-72
    [PMID:19359590]