PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 56710
Common NameMICPUN_56710
Organism
Micromonas sp. RCC299
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas
Family C3H
Protein Properties Length: 427aa    MW: 46138.4 Da    PI: 6.0358
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
56710genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.71.7e-071940425
             ---SGGGGTS--TTTTT-SS-S CS
  zf-CCCH  4 elCrffartGtCkyGdrCkFaH 25
             +lCr++ar G C yGd C+F H
    56710 19 ALCRHWARRGRCDYGDGCRFRH 40
             79******************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.5541543IPR000571Zinc finger, CCCH-type
SMARTSM003567.8E-41642IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-61842IPR000571Zinc finger, CCCH-type
PfamPF006426.3E-51940IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.8E-71941IPR000571Zinc finger, CCCH-type
SuperFamilySSF533352.25E-580142IPR029063S-adenosyl-L-methionine-dependent methyltransferase
Gene3DG3DSA:3.40.50.1501.9E-483142IPR029063S-adenosyl-L-methionine-dependent methyltransferase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MSREGEAPDP PGPLPATPAL CRHWARRGRC DYGDGCRFRH ERVPGDDADA DDPRVSAMDG  60
RREGATRFGR RHHARNRNKA GDFRRWLVAT FGFETLASGA GVLDVAGGKG ELAFELRNLS  120
GIPVTVVDPR PMRLERYVRR FRSGMYHRNQ SPAAAKLRRP LDSTLAAPDH LRMFLHRGVF  180
DPARSDGERR LAAIESHRLS HATRWSRRGL VDGESAPGDG DGDGESAPGD GVRDGANLDE  240
AYRIPGEPVR HATMFSEIPR RRDPDADDVE SDVYADVEAD VEADVDDPDA AAMTPVAMDA  300
SATADACERV FRDCSVVVGL HPDQATDAAV DLALAFGKPF AVVPCCTYSR DFPHRRLPPG  360
PGRPRGGGAV TTHAHLVEYL LAKAAPGTTI ERDELPFEGK NVVVYSLGDG GSELLCRAVD  420
GLGVGE*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0013240.0CP001324.1 Micromonas sp. RCC299 chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002500396.10.0predicted protein
TrEMBLC1E1150.0C1E115_MICCC; Uncharacterized protein
STRINGXP_002500396.10.0(Micromonas sp. RCC299)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP348811
Publications ? help Back to Top
  1. Worden AZ, et al.
    Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.
    Science, 2009. 324(5924): p. 268-72
    [PMID:19359590]