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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 56696 | ||||||||
Common Name | SELMODRAFT_56696 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
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Family | C2H2 | ||||||||
Protein Properties | Length: 260aa MW: 28540.7 Da PI: 10.7632 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.2 | 0.00027 | 83 | 106 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y+C+ Cg+ ++++ +Lk+H + H 56696 83 YECNLCGRKCKTNLDLKKHFKQlH 106 99*****************98777 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 7.1E-5 | 82 | 109 | No hit | No description |
SMART | SM00355 | 0.0086 | 83 | 106 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.115 | 83 | 111 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 85 | 106 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
ATPSRTVSIF WDLDNKPPAL APFTVAMRLK SAAGAFGCVR ETIALANRHA FIHIPEWVRE 60 QRRERKILDI LEKTGRIQPP APYECNLCGR KCKTNLDLKK HFKQLHERER GKRIARLNQL 120 TGKRRAKFQS AIAAKEQRYR AACSGGMGTA APAAAGYGLA AELRRAGVSV RTVSDKPDAA 180 DEALKRRMEA TIFGAEGSGG SAGENCVCLV SDDSGFGGVL RDARRRRART VVIGSSGSLR 240 RYSDAWLSWE DVMSGLGQRD |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002979111.2 | 0.0 | uncharacterized protein LOC9659766 | ||||
TrEMBL | D8S6I2 | 0.0 | D8S6I2_SELML; Uncharacterized protein (Fragment) | ||||
STRING | EFJ20068 | 0.0 | (Selaginella moellendorffii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP3048 | 14 | 20 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52010.1 | 9e-62 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | 56696 |
Entrez Gene | 9659766 |
Publications ? help Back to Top | |||
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