 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
56610 |
| Common Name | SELMODRAFT_46532, SELMODRAFT_56610 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
|
| Family |
bHLH |
| Protein Properties |
Length: 184aa MW: 19865.5 Da PI: 6.523 |
| Description |
bHLH family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| 56610 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HLH | 45.8 | 1.1e-14 | 19 | 65 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
++h+e+ErrRR+riN+ +++Lr llP+ +K +Ka+ L +++e++k+L
56610 19 KSHSEAERRRRERINNHLNTLRGLLPST-----TKTDKASLLAEVIEHVKDL 65
79*************************9.....8****************99 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0009718 | Biological Process | anthocyanin-containing compound biosynthetic process |
| GO:0016036 | Biological Process | cellular response to phosphate starvation |
| GO:0080147 | Biological Process | root hair cell development |
| GO:0005634 | Cellular Component | nucleus |
| GO:0046983 | Molecular Function | protein dimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 184 aa
Download sequence Send
to blast |
LSKMTPQEII DAKALAASKS HSEAERRRRE RINNHLNTLR GLLPSTTKTD KASLLAEVIE 60
HVKDLKRQAA EIAEGGPVPT DVDELKVDTD ASSSDGNFVL KASLCCEDRP DLLSDLTKAL 120
RTLKLRTLKA EIATLGGRVK NVILIGKDHS DEQGGAAMES SSDGTGDRPS VSCVQEALRA 180
VIER
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription factor required for MONOPTEROS-dependent root initiation in embryo. Transcriptionally controlled by MONOPTEROS. {ECO:0000269|PubMed:20220754}. |
| Publications
? help Back to Top |
- Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
Differentiation, 2010. 80(1): p. 1-8
[PMID:20219281] - Banks JA, et al.
The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
Science, 2011. 332(6032): p. 960-3
[PMID:21551031] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Ohashi-Ito K, et al.
A bHLH complex activates vascular cell division via cytokinin action in root apical meristem.
Curr. Biol., 2014. 24(17): p. 2053-8
[PMID:25131670] - Jost R, et al.
Differentiating phosphate-dependent and phosphate-independent systemic phosphate-starvation response networks in Arabidopsis thaliana through the application of phosphite.
J. Exp. Bot., 2015. 66(9): p. 2501-14
[PMID:25697796] - Vera-Sirera F, et al.
A bHLH-Based Feedback Loop Restricts Vascular Cell Proliferation in Plants.
Dev. Cell, 2015. 35(4): p. 432-43
[PMID:26609958] - Katayama H, et al.
A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem.
Curr. Biol., 2015. 25(23): p. 3144-50
[PMID:26616019] - Ezer D, et al.
The G-Box Transcriptional Regulatory Code in Arabidopsis.
Plant Physiol., 2017. 175(2): p. 628-640
[PMID:28864470]
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