PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

56419

Common Name

MICPUCDRAFT_56419

Organism

Micromonas pusilla CCMP1545

Taxonomic ID

564608

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas; Micromonas pusilla

Family

HB-other

Protein Properties

Length: 383aa MW: 41474.4 Da PI: 11.6483

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
56419	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	21.1	5.2e-07	254	305	5	56
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 t++ ++ + +Le++++ +ryp+ + + ++L+ +++ WF+ +R ek 56419 254 TRLGATNVATLEKVYAAERYPDDGMVDSVHRATKLPRSKIVAWFKTKREEEK 305 666778899***************************************9887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.82E-8	249	309	IPR009057	Homeodomain-like
PROSITE profile	PS50071	9.426	253	307	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	2.3E-8	253	309	IPR009057	Homeodomain-like
Pfam	PF00046	1.1E-4	254	305	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 383 aa Download sequence Send to blast
MASASLAARA LDASALRNPR ARIPRASAGA RAPAASGRRA VRSARHQFAA AAIPRTTPRG 60 PAPPRASADD DEEEEEDWEK LFTELKPLTP ELPRYKARAR PRASNPPRRA ALGSSRPHRV 120 ALASPEPKTP SSSAIRSIHP SVAILEKALA RGRRRIPISK IARDLELRRD DVLAWVRANA 180 HREPELARSH PPEPERVATV RLDRDGNVAS ASRAGRNGRD AAVSSQTSYL KHAPGAADAH 240 VPKGAPAWKG FNKTRLGATN VATLEKVYAA ERYPDDGMVD SVHRATKLPR SKIVAWFKTK 300 REEEKAAKRG GERRGGERGD ERGGRGGGGG RARDGDGDGF YDRRGRDDGM RGGEMKRDGY 360 GNKPQAEGRR DSTSGWSGGR RR*

Sequence ? help Back to Top

Protein Sequence Length: 383 aa Download sequence Send to blast

MASASLAARA LDASALRNPR ARIPRASAGA RAPAASGRRA VRSARHQFAA AAIPRTTPRG  60
PAPPRASADD DEEEEEDWEK LFTELKPLTP ELPRYKARAR PRASNPPRRA ALGSSRPHRV  120
ALASPEPKTP SSSAIRSIHP SVAILEKALA RGRRRIPISK IARDLELRRD DVLAWVRANA  180
HREPELARSH PPEPERVATV RLDRDGNVAS ASRAGRNGRD AAVSSQTSYL KHAPGAADAH  240
VPKGAPAWKG FNKTRLGATN VATLEKVYAA ERYPDDGMVD SVHRATKLPR SKIVAWFKTK  300
REEEKAAKRG GERRGGERGD ERGGRGGGGG RARDGDGDGF YDRRGRDDGM RGGEMKRDGY  360
GNKPQAEGRR DSTSGWSGGR RR*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	321	330	RGGRGGGGGR
2	322	329	GGRGGGGG

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003056881.1	0.0	ocp3-like homeobox transcription factor
TrEMBL	C1MM68	0.0	C1MM68_MICPC; Ocp3-like homeobox transcription factor
STRING	XP_003056881.1	0.0	(Micromonas pusilla)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP7109	6	6

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G11270.1	1e-06	overexpressor of cationic peroxidase 3

Link Out ? help Back to Top
Phytozome	56419
Entrez Gene	9682320

Publications ? help Back to Top
Worden AZ, et al. Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas. Science, 2009. 324(5924): p. 268-72 [PMID:19359590]