PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

56291

Common Name

MICPUN_56291

Organism

Micromonas sp. RCC299

Taxonomic ID

296587

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas

Family

bZIP

Protein Properties

Length: 356aa MW: 37235.2 Da PI: 10.6948

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
56291	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	40	8.5e-13	217	271	3	57
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 e++r+rr+ +NRe+ArrsR+RK++ ++ Le + + +aeN aL ++l e + v+ 56291 217 EVRRQRRMLSNRESARRSRRRKLEHVATLEGQINQHKAENLALLERLRESEARVE 271 689*****************************************99999887766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.6E-12	215	279	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.1E-10	217	270	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.025	217	280	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	9.0E-10	219	281	No hit	No description
SuperFamily	SSF57959	7.72E-10	219	265	No hit	No description
PROSITE pattern	PS00036	0	222	237	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 356 aa Download sequence Send to blast
MPMERTASVE DMVGNLWRLG RTPSQAEFEQ FFSNIAQVGS QQNLAAQAAA AQAAQAAQPE 60 TNGTDATGIP RVASIDLLRK MIMQGQQPPV APAMVPNLMN PMAGMGAMQT GLGGAGLGVA 120 GMIPGVGAAG INPVALAAAG IPGNVAPPSP KVEKKPPKRA PAPKTKAPAN KKTSPAPAKK 180 GVKREASADP SDKASDDDFS DSEGGEGEGG KGKTTDEVRR QRRMLSNRES ARRSRRRKLE 240 HVATLEGQIN QHKAENLALL ERLRESEARV EAVVRENAQL KAEIVRMSEV AGAGGKPMER 300 ASSLQRIASA GNLAKSNLGG TASPQMSGDD SPRGFVPFRS LQSYENLLSL QAQGR*

Sequence ? help Back to Top

Protein Sequence Length: 356 aa Download sequence Send to blast

MPMERTASVE DMVGNLWRLG RTPSQAEFEQ FFSNIAQVGS QQNLAAQAAA AQAAQAAQPE  60
TNGTDATGIP RVASIDLLRK MIMQGQQPPV APAMVPNLMN PMAGMGAMQT GLGGAGLGVA  120
GMIPGVGAAG INPVALAAAG IPGNVAPPSP KVEKKPPKRA PAPKTKAPAN KKTSPAPAKK  180
GVKREASADP SDKASDDDFS DSEGGEGEGG KGKTTDEVRR QRRMLSNRES ARRSRRRKLE  240
HVATLEGQIN QHKAENLALL ERLRESEARV EAVVRENAQL KAEIVRMSEV AGAGGKPMER  300
ASSLQRIASA GNLAKSNLGG TASPQMSGDD SPRGFVPFRS LQSYENLLSL QAQGR*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP001323	0.0	CP001323.1 Micromonas sp. RCC299 chromosome 2, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002499993.1	0.0	predicted protein
TrEMBL	C1E070	0.0	C1E070_MICCC; Uncharacterized protein
STRING	XP_002499993.1	0.0	(Micromonas sp. RCC299)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP8223	5	5

Link Out ? help Back to Top
Phytozome	56291
Entrez Gene	8240702

Publications ? help Back to Top
Worden AZ, et al. Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas. Science, 2009. 324(5924): p. 268-72 [PMID:19359590]