PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information? help Back to Top

TF ID

56076

Common Name

MICPUN_56076

Organism

Taxonomic ID

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas

Family

Protein Properties

Length: 320aa MW: 33787.7 Da PI: 8.203

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
56076	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21.3	4.8e-07	278	300	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C+f ++ G C+ Gd C+F+H+ 56076 278 KPCQFLSKPGGCRMGDACRFSHD 300 59********************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	13.732	274	302	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	2.49E-5	277	303	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	5.3E-5	278	302	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	6.4E-5	278	300	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 320 aa Download sequence Send to blast
MTAESCVNVL FDDDAEDRRE VMAAAGVEEL IDRLPDALFG FDDDAEELTP FKAVYGSAPD 60 RSPPDFGGRG ALIGGARRQS VNLVDPGKYT PPNRLNGGVP PRSPPRRNRR DSNRHQNPKK 120 NVNPAPGFNG AGFRSVREIY SSKVHDYLCA KAIEGSPWVT LVKLAIDLEK PLTVPENYAK 180 FFKSLPEMFE LSMDGKYVAA KLPGEDHAAI PPPPGSSISS GQSSPAELSS SPASDEFTLV 240 TSRKGRRTRN DAQPQARSLS PGSTGSAGSS GGGSASSKPC QFLSKPGGCR MGDACRFSHD 300 LGDSSGKPPR PGTFGAAPA*

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP001323	0.0	CP001323.1 Micromonas sp. RCC299 chromosome 2, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002500099.1	0.0	hypothetical protein MICPUN_56076
TrEMBL	C1DY36	0.0	C1DY36_MICCC; Uncharacterized protein
STRING	XP_002500099.1	0.0	(Micromonas sp. RCC299)

Link Out ? help Back to Top
Phytozome	56076
Entrez Gene	8240815

Publications ? help Back to Top
Worden AZ, et al. Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas. Science, 2009. 324(5924): p. 268-72 [PMID:19359590]