PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 56004
Common NameMICPUCDRAFT_56004
Organism
Micromonas pusilla CCMP1545
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas; Micromonas pusilla
Family GATA
Protein Properties Length: 692aa    MW: 75867.9 Da    PI: 4.5446
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
56004genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.67.3e-18355387133
   GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkk 33 
            C+ C+t kTp+WR+gpdg+ktLCnaCG+++++ 
  56004 355 CRTCRTRKTPMWRHGPDGPKTLCNACGVRWKLG 387
            *******************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.6E-14349400IPR000679Zinc finger, GATA-type
PROSITE profilePS5011414.365349404IPR000679Zinc finger, GATA-type
SuperFamilySSF577166.65E-13350398No hitNo description
Gene3DG3DSA:3.30.50.102.0E-14353391IPR013088Zinc finger, NHR/GATA-type
CDDcd002026.58E-15354405No hitNo description
PfamPF003201.9E-15355387IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 692 aa     Download sequence    Send to blast
MPREKATLRC CRARRAHDDE RIDGAVADEH LDRTASTSAS RRDDRAAIDR DVWKTAVRRA  60
ISSEMGSEND DAVADRAQLY AQDAARGLVE RVVVGEGDEG HDPYRWTDED FPDKTAHSLL  120
RRGVNLKPAA PAKTKTKPAR ASSPVPRRSS PAIDDVVEIV VRDVEVTAAV AANRCPPDTV  180
TEATTRASGV VVADVDAGTL GVEGASAVQA PPRRDIRDVE DDEELMSSWQ TAAETAAPSG  240
TARDPIEIDA DAEEDAGGGG VRRRPYEEDD DEDGEEKEEE ERVTMPPRAR APPQEPARTF  300
KQHIRFTTPD RESDQEPDRE PEPEHQEPEP TPGLLPRDRR RRGGSNERRA QSKVCRTCRT  360
RKTPMWRHGP DGPKTLCNAC GVRWKLGKAP RTKQAPRKRR AETRPDAKDA DVVAKKPRVE  420
PELEEAETPP LVVDEVPESE RARADHRAAA ADAADAAADD DEERLGGDQA ETCVRRRLRR  480
KRDVASIEAL ALDEHEVHDG GREEALWAKS PWEVVNVPPD DVSPARGGDA DDGDGDGATR  540
DRDDPARNAL DDFERNEPED DEDEEEEDED EEMEEMERFD DAPENATSAG ANAAEGARGQ  600
GDAGIAAAFA RDARETANAM FSHFDAAFAP SVVDIQQRLE MIKAFQARRA LELAELSGVC  660
ATIISFIPSH KVIRKTRLAG EGRGARGGEP R*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1475482RRLRRKRD
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003057157.10.0predicted protein
TrEMBLC1MNR80.0C1MNR8_MICPC; Predicted protein
STRINGXP_003057157.10.0(Micromonas pusilla)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP43691012
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08000.26e-11GATA transcription factor 10
Publications ? help Back to Top
  1. Worden AZ, et al.
    Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.
    Science, 2009. 324(5924): p. 268-72
    [PMID:19359590]