PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

55883

Common Name

MICPUCDRAFT_55883

Organism

Micromonas pusilla CCMP1545

Taxonomic ID

564608

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas; Micromonas pusilla

Family

MYB_related

Protein Properties

Length: 3029aa MW: 316228 Da PI: 5.6045

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
55883	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	42.8	1.2e-13	384	429	2	47
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++WT+eE+ ++ + +++G+g+W++I++ + + Rt+ q+ s+ qky 55883 384 QPWTEEEHRMFLVGLAKYGKGNWSAISQNVVLSRTPTQIMSHAQKY 429 79*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.25.40.10	2.5E-11	138	232	IPR011990	Tetratricopeptide-like helical domain
PROSITE profile	PS50293	11.619	139	225	IPR013026	Tetratricopeptide repeat-containing domain
SuperFamily	SSF48452	2.71E-9	139	229	IPR011990	Tetratricopeptide-like helical domain
PROSITE profile	PS51294	15.32	378	434	IPR017930	Myb domain
SuperFamily	SSF46689	1.12E-12	380	435	IPR009057	Homeodomain-like
SMART	SM00717	3.3E-10	382	432	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.3E-11	384	434	IPR009057	Homeodomain-like
Pfam	PF00249	1.3E-11	384	429	IPR001005	SANT/Myb domain
TIGRFAMs	TIGR01557	2.2E-12	385	432	IPR006447	Myb domain, plants
CDD	cd00167	1.57E-9	385	429	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.7E-4	495	563	IPR009057	Homeodomain-like
PROSITE profile	PS50090	5.912	496	559	IPR017877	Myb-like domain
SuperFamily	SSF46689	3.89E-6	499	561	IPR009057	Homeodomain-like
SMART	SM00717	0.027	500	561	IPR001005	SANT/Myb domain
CDD	cd11660	4.11E-7	503	559	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 3029 aa Download sequence Send to blast
MALQLAALND PLSGARGDGG VEEARRTTEA EESLLTSAYE TALLFIRDGK REDAVRELRG 60 ILRNALMTDR DDDDDDAPSL TPTMTQVKFL ALKNLGRLVA DLAIEREDAG SSGSDDDDDD 120 DDADEDADLT ATERDLAADY AEALRAYAAA VEIDATDSSL WRRLGALASR RNLLHLARHA 180 LERGLVARPN HPLLLEDLAE VLLAVGDYPA CAHVAGLLLR LDPRHSRARE MRAGGEGAER 240 LRLTAAHEAA RRRAARRGRA AARHRKRGRE EETAARCARD DEATRDECER GEDVAVGGAL 300 IVKLERRTWE AVACALAATM DPTTSGGAAP ATRKKRAGGV AGDAVDADAA RPSTPPATEA 360 EPAGTRGEGG AGRTWRCPNR APPQPWTEEE HRMFLVGLAK YGKGNWSAIS QNVVLSRTPT 420 QIMSHAQKYY NHLSKHGAWE RAWAPTASEA AAEAAAEAAL LSATAAAEAD EIDLTKDDSP 480 VPVRVPVPVR VPASEPETRV RTPWAEQDVD FLLEGYEQFG PDGEDSKTLW VDILAAGVKQ 540 NLFKHRTPVD LKDKYRNVLF KRAREAANAS SPPPPPPPPA HPKTPEPRHW AVGVAIPGST 600 LGRRVRFVVP ASGGGGGFEE AKPVSGIDRP SRAGAGAGAG GGDEDDATTT TTTAAGIDEA 660 PRAMDVDAAA GTTTTTTTTT GKAANAKAKP GRKPKPKREG TRRGRSASAS EISTEPTSAP 720 AVPPPPAAAA AAEAMDVDVA APSGAESALE EAAGASGATS DAPRAGAGAG AGAVEKPPAA 780 GGKKKDSAPA RKSKRQIEKE DQEERERLHK EAWERRRAEQ QVALALAAEE NKWRPMKNLA 840 NDLASTALGG DSAAAMRADA DAAAIVAAAP VIQDDAAEKE KERESESAAP DSAPDSSAPP 900 EGAEEEPEPE EDKEEAADVA AFLGSVTSRN SGAADVAWRL LLHVTSRWCP TSEGASTDDV 960 APDAAAAEKL KAKRSNQWTK NRARDVSGGF CLKNAPRPAT LLRLAAAFGV GDGAGAPRVH 1020 LCLADAAVRA SRAALGAAYA ATHHRRRKAD GYEGPVLSDA AAKAAAEVTE GLPASHFVDA 1080 ANAHLDAAVA AADDDDFALM AEYHFVRGNL AAAEGSIALA EEHLRASVDA ATLAESGSGS 1140 EEGAKQRLLR DASCDGAADR LSAAAARAAL ADVRLHAVVA GADASLQAGN TAELLAVLAP 1200 LLLPLDASGA SAGAPQRGGS HAPVVLTPTQ REKALRTLAK AAKAEGDAHY PLAAGGNAAA 1260 AKVAEYALAT EVRARGALFA AVTAGGAGDA DVVVTRDALT DVFDVLQRAR STRTAGAFSP 1320 AAVAAAAARD AAERKKSAAD AMEDYDDDDD DDDAREMATQ HAARAIASLA PLFSKQIEAQ 1380 YASRAIAPGE TPTRRKNKVE QAKEDAAATI MELSAEALSV IQQLTSPPDD VVFTGDDGAP 1440 EEDFPDDNVT VADAPLGDAD APSPLSVLEL HERLHAALAD CRCCCGAAAR GGGSFLRDAI 1500 PTLTTARAPF ARESRRLKEL ARKAEESAAA RAKEERELAK KAAAERRAAL RAERAAKGEN 1560 AAEEEDEEED EEEEEEDDAD ARDKAAAKKT KAAGRGRPRG RAGAGGDDKE KNKAKAAFVR 1620 QNQKNDVRGG GGDGTVMGDG FVHYAGDVYV QSTQRPGGTH HDLAFALFRK DKTSYAFKDC 1680 DATGKYSKGK DQAILRSKIA VGRYLEREGL SEEEVEKREN ALKEAKAKAE AEAKENALKH 1740 PHVARECVDF LGSPPPKPST SSLPPLPPLA APKPKPSTRR EKIDAALKRF DDMIAQCTYC 1800 LYGAELGDVP RRCRDEGGAS GKELVLTSRR ACAELWRHVL PYAENLRSLG NGHGFKTVLD 1860 AVRRVFPPES ALPRDSPDVV DEYLKALPAF ADAEVLNPWD VASEASRGAW GRDEEFKLAR 1920 EAVSRAPPKR QREAKARASR KLAAVAEDEE GGGGGDGGGG DGDGDVAMID LADGPTPAPT 1980 PGPSPAPTPA SAPAPSPGGN MWRGLADMLG GPGIETRGVD RGASSPNADA AGGGGGATGD 2040 AEEEKEPLID PAVEFASAHE TLHRFCARVA DVEENDAAFE RVSETLPVIL DLMYHCVPVT 2100 REEAASRAAR WATQAAERAK TAKKGAKSRD APVAAATAAA RHAALLKADL THNPSSFDAW 2160 LALADHLDSC KDLALNDAAK LVTTYQWRRS PEAEARARRC QLALRRACCA AIVAATCDEE 2220 RSAAYERAGL AAYEHVSRAP PFHDGRRFVM SRDAGWRRSL GLCRDAFDGA ASAAPEEWTH 2280 RLMGVKIGRK LGEPLDVLFR RVDETLKLAP GNLEVFYQTH TTRVKALLKI AASSAAGWTM 2340 PAGAAGGRGK AAAKAALAKD LRLVASHAFD PEAVKSKDAG WDALWDDAVA GVRACAKMLP 2400 TYHKAHYRIA WARLRKPGDA ADAVARVAEA KDALLPLFKT AENASGFAKA DVAQYRPHGG 2460 GPPRFAVNMW EIEDGNSGVT RGACRRGVVA GAFKLETVGL NESARKYVSA VRRATRVYVC 2520 MSFALGDLSP LVAAPGFIGD EKNKFAKSMR DIKSLAFGLA VRAVAAACAA VVPDPRSLEL 2580 AYYAWAEHGC KAAATAWDEA VAASVHEIKI ERDAAAAARG DDDDDDDDAP AKLLGEPFSA 2640 ALKNCAGPEL DARVDASAFE TLARAHVASL KDERDVATLR ALLTDAAKKL ADASKRAARA 2700 TKGAEAAAAA AATAAATAPA TRLRAFVRDA LVLTIERAIA AGDVRVVAVA ENDGDAENAE 2760 DAAAIAVVEA AATRRRVNAN VVAGALGLHK EAELAASPAA TEAHEASRYA VHADALAEAA 2820 SASAKAAADG LRHVEAAAAA AARDAGVVAM DVVNESAQVF AATVQSPTKQ LERAVRARDE 2880 LAVAHAARLE AETAATARAA AARGRADALL AAAEAARLAT ASATALLRRA LVAALGADKT 2940 NVDDAALASI AEEYVKEAGL WDPIAEARKT GGGRWGGGGG AGKTATATVA ATEGSGGGGG 3000 GSAKKRVSVG DVGQGSGERA TRLSTGGE*

Sequence ? help Back to Top

Protein Sequence Length: 3029 aa Download sequence Send to blast

MALQLAALND PLSGARGDGG VEEARRTTEA EESLLTSAYE TALLFIRDGK REDAVRELRG  60
ILRNALMTDR DDDDDDAPSL TPTMTQVKFL ALKNLGRLVA DLAIEREDAG SSGSDDDDDD  120
DDADEDADLT ATERDLAADY AEALRAYAAA VEIDATDSSL WRRLGALASR RNLLHLARHA  180
LERGLVARPN HPLLLEDLAE VLLAVGDYPA CAHVAGLLLR LDPRHSRARE MRAGGEGAER  240
LRLTAAHEAA RRRAARRGRA AARHRKRGRE EETAARCARD DEATRDECER GEDVAVGGAL  300
IVKLERRTWE AVACALAATM DPTTSGGAAP ATRKKRAGGV AGDAVDADAA RPSTPPATEA  360
EPAGTRGEGG AGRTWRCPNR APPQPWTEEE HRMFLVGLAK YGKGNWSAIS QNVVLSRTPT  420
QIMSHAQKYY NHLSKHGAWE RAWAPTASEA AAEAAAEAAL LSATAAAEAD EIDLTKDDSP  480
VPVRVPVPVR VPASEPETRV RTPWAEQDVD FLLEGYEQFG PDGEDSKTLW VDILAAGVKQ  540
NLFKHRTPVD LKDKYRNVLF KRAREAANAS SPPPPPPPPA HPKTPEPRHW AVGVAIPGST  600
LGRRVRFVVP ASGGGGGFEE AKPVSGIDRP SRAGAGAGAG GGDEDDATTT TTTAAGIDEA  660
PRAMDVDAAA GTTTTTTTTT GKAANAKAKP GRKPKPKREG TRRGRSASAS EISTEPTSAP  720
AVPPPPAAAA AAEAMDVDVA APSGAESALE EAAGASGATS DAPRAGAGAG AGAVEKPPAA  780
GGKKKDSAPA RKSKRQIEKE DQEERERLHK EAWERRRAEQ QVALALAAEE NKWRPMKNLA  840
NDLASTALGG DSAAAMRADA DAAAIVAAAP VIQDDAAEKE KERESESAAP DSAPDSSAPP  900
EGAEEEPEPE EDKEEAADVA AFLGSVTSRN SGAADVAWRL LLHVTSRWCP TSEGASTDDV  960
APDAAAAEKL KAKRSNQWTK NRARDVSGGF CLKNAPRPAT LLRLAAAFGV GDGAGAPRVH  1020
LCLADAAVRA SRAALGAAYA ATHHRRRKAD GYEGPVLSDA AAKAAAEVTE GLPASHFVDA  1080
ANAHLDAAVA AADDDDFALM AEYHFVRGNL AAAEGSIALA EEHLRASVDA ATLAESGSGS  1140
EEGAKQRLLR DASCDGAADR LSAAAARAAL ADVRLHAVVA GADASLQAGN TAELLAVLAP  1200
LLLPLDASGA SAGAPQRGGS HAPVVLTPTQ REKALRTLAK AAKAEGDAHY PLAAGGNAAA  1260
AKVAEYALAT EVRARGALFA AVTAGGAGDA DVVVTRDALT DVFDVLQRAR STRTAGAFSP  1320
AAVAAAAARD AAERKKSAAD AMEDYDDDDD DDDAREMATQ HAARAIASLA PLFSKQIEAQ  1380
YASRAIAPGE TPTRRKNKVE QAKEDAAATI MELSAEALSV IQQLTSPPDD VVFTGDDGAP  1440
EEDFPDDNVT VADAPLGDAD APSPLSVLEL HERLHAALAD CRCCCGAAAR GGGSFLRDAI  1500
PTLTTARAPF ARESRRLKEL ARKAEESAAA RAKEERELAK KAAAERRAAL RAERAAKGEN  1560
AAEEEDEEED EEEEEEDDAD ARDKAAAKKT KAAGRGRPRG RAGAGGDDKE KNKAKAAFVR  1620
QNQKNDVRGG GGDGTVMGDG FVHYAGDVYV QSTQRPGGTH HDLAFALFRK DKTSYAFKDC  1680
DATGKYSKGK DQAILRSKIA VGRYLEREGL SEEEVEKREN ALKEAKAKAE AEAKENALKH  1740
PHVARECVDF LGSPPPKPST SSLPPLPPLA APKPKPSTRR EKIDAALKRF DDMIAQCTYC  1800
LYGAELGDVP RRCRDEGGAS GKELVLTSRR ACAELWRHVL PYAENLRSLG NGHGFKTVLD  1860
AVRRVFPPES ALPRDSPDVV DEYLKALPAF ADAEVLNPWD VASEASRGAW GRDEEFKLAR  1920
EAVSRAPPKR QREAKARASR KLAAVAEDEE GGGGGDGGGG DGDGDVAMID LADGPTPAPT  1980
PGPSPAPTPA SAPAPSPGGN MWRGLADMLG GPGIETRGVD RGASSPNADA AGGGGGATGD  2040
AEEEKEPLID PAVEFASAHE TLHRFCARVA DVEENDAAFE RVSETLPVIL DLMYHCVPVT  2100
REEAASRAAR WATQAAERAK TAKKGAKSRD APVAAATAAA RHAALLKADL THNPSSFDAW  2160
LALADHLDSC KDLALNDAAK LVTTYQWRRS PEAEARARRC QLALRRACCA AIVAATCDEE  2220
RSAAYERAGL AAYEHVSRAP PFHDGRRFVM SRDAGWRRSL GLCRDAFDGA ASAAPEEWTH  2280
RLMGVKIGRK LGEPLDVLFR RVDETLKLAP GNLEVFYQTH TTRVKALLKI AASSAAGWTM  2340
PAGAAGGRGK AAAKAALAKD LRLVASHAFD PEAVKSKDAG WDALWDDAVA GVRACAKMLP  2400
TYHKAHYRIA WARLRKPGDA ADAVARVAEA KDALLPLFKT AENASGFAKA DVAQYRPHGG  2460
GPPRFAVNMW EIEDGNSGVT RGACRRGVVA GAFKLETVGL NESARKYVSA VRRATRVYVC  2520
MSFALGDLSP LVAAPGFIGD EKNKFAKSMR DIKSLAFGLA VRAVAAACAA VVPDPRSLEL  2580
AYYAWAEHGC KAAATAWDEA VAASVHEIKI ERDAAAAARG DDDDDDDDAP AKLLGEPFSA  2640
ALKNCAGPEL DARVDASAFE TLARAHVASL KDERDVATLR ALLTDAAKKL ADASKRAARA  2700
TKGAEAAAAA AATAAATAPA TRLRAFVRDA LVLTIERAIA AGDVRVVAVA ENDGDAENAE  2760
DAAAIAVVEA AATRRRVNAN VVAGALGLHK EAELAASPAA TEAHEASRYA VHADALAEAA  2820
SASAKAAADG LRHVEAAAAA AARDAGVVAM DVVNESAQVF AATVQSPTKQ LERAVRARDE  2880
LAVAHAARLE AETAATARAA AARGRADALL AAAEAARLAT ASATALLRRA LVAALGADKT  2940
NVDDAALASI AEEYVKEAGL WDPIAEARKT GGGRWGGGGG AGKTATATVA ATEGSGGGGG  3000
GSAKKRVSVG DVGQGSGERA TRLSTGGE*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	691	698	RKPKPKRE
2	2971	2979	GGRWGGGGG

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003057099.1	0.0	predicted protein
TrEMBL	C1MNG1	0.0	C1MNG1_MICPC; Predicted protein
STRING	XP_003057099.1	0.0	(Micromonas pusilla)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP322	15	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G11280.2	9e-18	MYB family protein

Link Out ? help Back to Top
Phytozome	55883
Entrez Gene	9682103

Publications ? help Back to Top
Worden AZ, et al. Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas. Science, 2009. 324(5924): p. 268-72 [PMID:19359590]