PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 55221
Common NameMICPUN_55221
Organism
Micromonas sp. RCC299
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas
Family ERF
Protein Properties Length: 275aa    MW: 30951.1 Da    PI: 10.1702
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
55221genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP235.42.6e-11151195150
    AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaar 50 
            s+y+GV++   + rW+A+ r    ng  k  slg f++++eAa+a+++++
  55221 151 SKYRGVHQTFPTRRWEAQFRR---NG--KPTSLGCFDYEDEAARAYDRMM 195
            89****************555...54..**********99*******976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008478.3E-8151195IPR001471AP2/ERF domain
SuperFamilySSF541712.16E-9151196IPR016177DNA-binding domain
PROSITE profilePS5103210.441152192IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.4E-7152196IPR001471AP2/ERF domain
SMARTSM003800.0016152231IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MSSPTDQRSA VHYVTGMKFS SREGQKLCVA RVAPSLPNLR ESIASFTALP SAFGVSVILQ  60
FSIELFDLFY KKSQSFPSGK LKRVLHKLSR QTDCFLVPGW SCDPMYLQMM HCARNPHIQC  120
VGRYNVDMGT RQSVHKVARQ KGVSSGRTYT SKYRGVHQTF PTRRWEAQFR RNGKPTSLGC  180
FDYEDEAARA YDRMMVWCEL HGQDSRGGKV GAHRSHIAQL SLNFDYNDYE GDLIALRHVS  240
QDDLVQSLRR QGRMQASNNT GGSFSGASTH KKLP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0015740.0CP001574.1 Micromonas sp. RCC299 chromosome 1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002507210.10.0predicted protein
TrEMBLC1FDX60.0C1FDX6_MICCC; Uncharacterized protein
STRINGXP_002507210.10.0(Micromonas sp. RCC299)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP27461414
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G39250.15e-10AP2 family protein
Publications ? help Back to Top
  1. Worden AZ, et al.
    Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.
    Science, 2009. 324(5924): p. 268-72
    [PMID:19359590]