PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 5500
Organism
Ostreococcus lucimarinus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family ARR-B
Protein Properties Length: 270aa    MW: 29628.1 Da    PI: 10.0034
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
5500genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like91.85.9e-29198251155
  G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
              kpr++W+ eLH++Fv av+qL G++kA+Pk+il+lm+v+gLt+e+v+SHLQkYRl
     5500 198 KPRVVWSAELHAQFVTAVNQL-GIDKAVPKRILDLMGVQGLTRENVASHLQKYRL 251
              79*******************.********************************8 PP
2Response_reg85.51.6e-2871151109
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 
                   vl+vdD+ l +++++++l+  +y +v+++++++ ale+l++++  +D++l D+ mp+mdG++ll+ i++e   lp+++++a+++++ +l+ +  Ga 
          5500   7 VLVVDDDLLCLKVVEKMLKACKY-KVTACSTAKTALEILRTRKeeFDIVLSDVHMPDMDGFKLLEIIQFEL-ALPVLMMSANSDSSVVLRGIIHGAV 101
                   89*********************.***************777777**********************9977.************************* PP

                   EEEESS--HHHHHH CS
  Response_reg  96 dflsKpfdpeelvk 109
                   d+l Kp+ +eel++
          5500 102 DYLLKPVRIEELRN 115
                   ************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363927.0E-1291270IPR017053Response regulator B-type, plant
SuperFamilySSF521721.42E-344124IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23005.1E-405142No hitNo description
SMARTSM004482.6E-305117IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011040.8656121IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.1E-247116IPR001789Signal transduction response regulator, receiver domain
CDDcd001568.52E-298120No hitNo description
PROSITE profilePS5129412.458195254IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.0E-31195256IPR009057Homeodomain-like
SuperFamilySSF466895.2E-20196255IPR009057Homeodomain-like
TIGRFAMsTIGR015578.1E-25198251IPR006447Myb domain, plants
PfamPF002491.0E-7200250IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0009414Biological Processresponse to water deprivation
GO:0010082Biological Processregulation of root meristem growth
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0031537Biological Processregulation of anthocyanin metabolic process
GO:0048367Biological Processshoot system development
GO:0080022Biological Processprimary root development
GO:0080036Biological Processregulation of cytokinin-activated signaling pathway
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
FPAGLGVLVV DDDLLCLKVV EKMLKACKYK VTACSTAKTA LEILRTRKEE FDIVLSDVHM  60
PDMDGFKLLE IIQFELALPV LMMSANSDSS VVLRGIIHGA VDYLLKPVRI EELRNIWQHV  120
VRRDYSSAKS SGSEDVEASS PSKRAKTSGS NSKSEEVDRT ASEMSSGKAR KKPTGKKGGK  180
SVKEAEKKDV VDNSNSKKPR VVWSAELHAQ FVTAVNQLGI DKAVPKRILD LMGVQGLTRE  240
NVASHLQKYR LYLKRLQGND ARGGGNASST
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-22196256363ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0005810.0CP000581.1 Ostreococcus lucimarinus CCE9901 chromosome 1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001415508.10.0predicted protein, partial
SwissprotA2X1N22e-94ORR24_ORYSI; Two-component response regulator ORR24
TrEMBLA4RR470.0A4RR47_OSTLU; Uncharacterized protein (Fragment)
STRINGABO938000.0(Ostreococcus 'lucimarinus')
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP12201516
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16857.11e-84response regulator 1