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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 54495 | ||||||||
Common Name | MICPUCDRAFT_54495 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas; Micromonas pusilla
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Family | HB-other | ||||||||
Protein Properties | Length: 156aa MW: 18112.2 Da PI: 12.1461 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 30.5 | 6.1e-10 | 41 | 91 | 7 | 57 |
--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 7 ftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 t++ ++Le ++e ++ p a++ ++LA++l+L+ V++WF rR +k+ 54495 41 VTEHHKKILEGVYELEPRPPARTEARLARQLDLDVVAVSTWFRTRRRVDKR 91 68999*****************************************87765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 11.791 | 32 | 92 | IPR001356 | Homeobox domain |
SMART | SM00389 | 5.7E-4 | 33 | 96 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 3.3E-7 | 35 | 91 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.28E-9 | 38 | 93 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 1.4E-7 | 41 | 91 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 67 | 90 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 156 aa Download sequence Send to blast |
MTSKAGAIDA AYLSSDDASK RMRRRHFLGE VQRIKARQSG VTEHHKKILE GVYELEPRPP 60 ARTEARLARQ LDLDVVAVST WFRTRRRVDK RRDMRFVGIL FFLIVFAVLL AVYWRVLLTL 120 VPIRPRWRGE RDSLRTSPGA SLRPPLAFNP RHRRL* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003064448.1 | 1e-107 | predicted protein | ||||
TrEMBL | C1N9G4 | 1e-106 | C1N9G4_MICPC; Predicted protein | ||||
STRING | XP_003064448.1 | 1e-106 | (Micromonas pusilla) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP9294 | 5 | 5 |
Link Out ? help Back to Top | |
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Phytozome | 54495 |
Entrez Gene | 9690056 |
Publications ? help Back to Top | |||
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