PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 54299
Common NameMICPUCDRAFT_54299
Organism
Micromonas pusilla CCMP1545
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas; Micromonas pusilla
Family MYB_related
Protein Properties Length: 1071aa    MW: 110684 Da    PI: 8.9066
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
54299genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.65e-07647697347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.......TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg.......kgRtlkqcksrwqky 47 
                      +W++ Ed+ll   v+++G++ W +I   +          R ++qc+ r+q++
            54299 647 PWSPTEDQLLCAIVHEFGSN-WGLITDVFAasapfkgVFRRAEQCRYRFQTL 697
                      8*****************99.****999999999*9999***********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5120410.388105179IPR014012Helicase/SANT-associated domain
SMARTSM005730.002106179IPR014012Helicase/SANT-associated domain
SMARTSM007175.3E-6644700IPR001005SANT/Myb domain
SuperFamilySSF466894.08E-6645697IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.7E-8646699IPR009057Homeodomain-like
PfamPF002498.2E-7647697IPR001005SANT/Myb domain
PROSITE profilePS500907.178647698IPR017877Myb-like domain
CDDcd001672.81E-4647697No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009909Biological Processregulation of flower development
GO:0043981Biological Processhistone H4-K5 acetylation
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:2000028Biological Processregulation of photoperiodism, flowering
GO:0035267Cellular ComponentNuA4 histone acetyltransferase complex
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1071 aa     Download sequence    Send to blast
MAGASKAKGA AAKAAEAKAA KAAAAAAAAA AEDDEPYVVD MKTIVRLEPA WVDFKPQPPP  60
PLPPLPHEGE TEEERRARLA TDAETIARAK AIKDSKAVLG AKIAAGPYGS ANRRKSHWDY  120
VLVEMRWMAS DFAAERDWKL AAARRMGSEC AAAKGTPERR DLESEATEEG KKRCTAVARE  180
VAAFWKKAWS RALEKPVPSA ATLVPEKKPA AADGGDGGGG GDDAAAVKKE TAAVAAEDGP  240
RARRSAAAAT ASEDAAATPT KAEKDADAVV AIEGKPDVDA TAAAAAAAAG AGAGAGAADA  300
AATDAPAAGA TDPNMQTPMA TIRAKSIFPA TPPPPPGVSV IEQWACVKLQ GDIARLKKET  360
IKEAMAEKED GGKGKKGKAG KGKAAAAAAA AAAAKKGGGR SSRRGRGAKD DPESEEEEEE  420
EDDDEEADPP AAAAAHASAA AANDDASTMP PPPPVYLPGG VPDATLDAEL DFDAVAPQTP  480
PRVLDDPPPL AYDCYASHAE RWWAASIAAE AQKFADYEVR LRDWEESEKR RARAVVEAAR  540
AAAEAEAQRA HQHMLNERRR AHQAMLAQQR AAAAAAAGAA GKGKRVRGGG EDDDSEDDDM  600
TLATLQNKGA GGSGGKKRKG GDVDAALGGR KKSHKKQKSG RGGVARPWSP TEDQLLCAIV  660
HEFGSNWGLI TDVFAASAPF KGVFRRAEQC RYRFQTLTQS AESDDPNAVR ALDLDKTTAR  720
QVMQRALPVE DNTARTHFER AGLCAVKHAK LRRAAAAERA GDDYTRRAVA HASWGAHRGL  780
RTSDPCDLAD QARSIHWSPY DGALLEAARA QQQQQQAQQQ QQAAAAQQQA AVQAAQMAGG  840
AGPGPGGGGG PDGGGGGGPM DAAAAQREQQ RRQQMQSQMQ MQRQQQYQMQ MQAQQQQQQQ  900
QQQQRQQAHQ MQSQNVHMQQ QQQQQAHMQQ QMHMQQQMHM QAANANKGAG GVKGGAKPAG  960
ANNPPPNAPP PGAMQGTFQP VPGATATMEM PTIPGGAPAS SPGRKGAGGG GGGGAAGAKG  1020
GGAGGPSPGL APGSYKYGGG GGGGEKAEQP AGRGASTRGA TTPRGKASKK *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17379ERRARLA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0013241e-32CP001324.1 Micromonas sp. RCC299 chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003064366.10.0predicted protein
TrEMBLC1N8Z40.0C1N8Z4_MICPC; Predicted protein
STRINGXP_003064366.10.0(Micromonas pusilla)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP349122
Publications ? help Back to Top
  1. Worden AZ, et al.
    Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.
    Science, 2009. 324(5924): p. 268-72
    [PMID:19359590]