PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	43.8	3.5e-14	269	301	1	33
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkk 33 C+nCg++ Tp WR++ g +LCnaCGly +k+ 54162 269 CVNCGVSRTPFWRKERVGGGSLCNACGLYLAKN 301 *****************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57716	6.18E-13	263	312	No hit	No description
PROSITE profile	PS50114	15.38	263	312	IPR000679	Zinc finger, GATA-type
SMART	SM00401	9.2E-11	263	314	IPR000679	Zinc finger, GATA-type
Gene3D	G3DSA:3.30.50.10	3.9E-16	264	312	IPR013088	Zinc finger, NHR/GATA-type
CDD	cd00202	7.41E-13	268	311	No hit	No description
PROSITE pattern	PS00344	0	269	294	IPR000679	Zinc finger, GATA-type
Pfam	PF00320	4.0E-12	269	301	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 405 aa Download sequence Send to blast
MTMSVKLPTQ PPIPRDVSAS FAAATAKDDK EAKQASGGKS TDAGKADASG KAPFVASAGI 60 DAAAIPAFPP AMAGFMQGAK FPLPQVGANP FAPPAGYPPM PVPPPHSGPA GSQPGAAGTA 120 QWNAMLQYYA YYSYLLCNGG MGGPVVDGAV PRVAPPPLVD VTAWRPGAAP GGVPGMPHHA 180 GMPGAPPGMT AAHMQSVAAM VAAMGAGQHA MAAAAAAMAA PHGGKRGDHG KKRERRGDDS 240 GDDASDSGGS SSSKRGKKRG ANGGEQKTCV NCGVSRTPFW RKERVGGGSL CNACGLYLAK 300 NDAPRPAMLW RRGGSGMGAA EGAAAAAAVG SIAGAGAGTD AVPVPTPAAA AFPAAPVPTA 360 TAAATEAEEP AKAEEPAKAE EPAKAEESVE AEPKKEEPAP APAP*

Sequence ? help Back to Top

Protein Sequence Length: 405 aa Download sequence Send to blast

MTMSVKLPTQ PPIPRDVSAS FAAATAKDDK EAKQASGGKS TDAGKADASG KAPFVASAGI  60
DAAAIPAFPP AMAGFMQGAK FPLPQVGANP FAPPAGYPPM PVPPPHSGPA GSQPGAAGTA  120
QWNAMLQYYA YYSYLLCNGG MGGPVVDGAV PRVAPPPLVD VTAWRPGAAP GGVPGMPHHA  180
GMPGAPPGMT AAHMQSVAAM VAAMGAGQHA MAAAAAAMAA PHGGKRGDHG KKRERRGDDS  240
GDDASDSGGS SSSKRGKKRG ANGGEQKTCV NCGVSRTPFW RKERVGGGSL CNACGLYLAK  300
NDAPRPAMLW RRGGSGMGAA EGAAAAAAVG SIAGAGAGTD AVPVPTPAAA AFPAAPVPTA  360
TAAATEAEEP AKAEEPAKAE EPAKAEESVE AEPKKEEPAP APAP*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP001323	0.0	CP001323.1 Micromonas sp. RCC299 chromosome 2, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002499977.1	0.0	predicted protein
TrEMBL	C1E042	0.0	C1E042_MICCC; Uncharacterized protein
STRING	XP_002499977.1	0.0	(Micromonas sp. RCC299)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP4198	11	11

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16141.1	4e-07	GATA family protein

Link Out ? help Back to Top
Phytozome	54162
Entrez Gene	8240690

Publications ? help Back to Top
Worden AZ, et al. Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas. Science, 2009. 324(5924): p. 268-72 [PMID:19359590]