PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 52223
Common NameMICPUN_52223
Organism
Micromonas sp. RCC299
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas
Family SBP
Protein Properties Length: 526aa    MW: 52013.6 Da    PI: 8.4144
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
52223genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP24.19.3e-0895178176
            --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTE....EEEE-TTTSSEEETTT--S......S--S-STTTT-------S- CS
    SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgl....eqrfCqqCsrfhelsefDe......ekrsCrrrLakhnerrrkk 76 
            +C+v+gC++ +s+a+e   r + C++h  a  v ++g     + rfC qC +fh l++f        +++ C +   +  err++k
  52223  95 VCRVDGCDVVFSTAHE--CRARACQKHCSALFVRLKGArpdeQFRFCYQCHKFHPLDNFRGpdgtllARHNCSQSQVQRLERRKRK 178
            6*******99999875..78999**********99975222257***************642223335677766655555555554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.2E-1389153IPR004333Transcription factor, SBP-box
PROSITE profilePS5114110.38393178IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.83E-695151IPR004333Transcription factor, SBP-box
PfamPF031105.2E-2096177IPR004333Transcription factor, SBP-box
CDDcd000650.00965100143No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 526 aa     Download sequence    Send to blast
MSPRRAAAKH AETETVDATP EAMENPAEEV VAEQSASGDP TKAETVDGSA EVAKQGTKRK  60
AEAGARMDDP SPKNEPTGSP EYNREDEMGG SKSRVCRVDG CDVVFSTAHE CRARACQKHC  120
SALFVRLKGA RPDEQFRFCY QCHKFHPLDN FRGPDGTLLA RHNCSQSQVQ RLERRKRKDA  180
LKASKKMAEA LGLNHPAQIE AVNLIGASNV GQLLLANQLV MHERLLAAIG AGGGAAQGLG  240
AAQGLGAAQG LGAAQGLGAA QGLGAAQGLG AAQGLGAAQG LGAAQGLGAA QGLGAAQGLG  300
AAQGLGAAQG LGAAQGSGAA QGLGAAQGLG ALQALIGAQG VGAAGSAQAN ALNQQLGKQQ  360
LPQQLEALAA LRQREQLAML NQAAGVKGLA GTQLSGLGPA VANGGLHGGA GVSAMLDAAV  420
RQEKLNMLSA TMANMVPSPA VGPAAASGLQ GLQGLQGAAA GLQGLQGAAA GLQGLQGAAA  480
GLQGAAAGLL WLQGAAANAP GANLNGDILK SLMGQLGHNG QNQPQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1173178RRKRKD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0013240.0CP001324.1 Micromonas sp. RCC299 chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002500521.10.0predicted protein
TrEMBLC1E1Q20.0C1E1Q2_MICCC; Uncharacterized protein
STRINGXP_002500521.10.0(Micromonas sp. RCC299)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP2012101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.13e-06SBP family protein
Publications ? help Back to Top
  1. Worden AZ, et al.
    Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.
    Science, 2009. 324(5924): p. 268-72
    [PMID:19359590]