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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 51893 | ||||||||
Common Name | MICPUCDRAFT_51893 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas; Micromonas pusilla
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Family | C2H2 | ||||||||
Protein Properties | Length: 211aa MW: 22977.8 Da PI: 9.4729 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.9 | 0.00069 | 6 | 27 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C+ Cg +F + L H ++H 51893 6 QCETCGARFYYPAKLAEHANVH 27 7*****************9998 PP | |||||||
2 | zf-C2H2 | 13.9 | 0.00016 | 33 | 57 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 ++C+ C + F++++ L++H ++H 51893 33 FRCEhdGCEEAFPTRDRLRTHAQKH 57 89********************999 PP | |||||||
3 | zf-C2H2 | 16.5 | 2.3e-05 | 118 | 142 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 + Cp Cgk F++ +H rtH 51893 118 HACPheGCGKAFKTEKAVASHARTH 142 579999******************9 PP | |||||||
4 | zf-C2H2 | 13.4 | 0.00022 | 148 | 173 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 y+C+ C + Fs++ ++ rH + H 51893 148 YRCTfgACERAFSSQGEFSRHRIKtH 173 899999***************99888 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 3.8 | 5 | 27 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.572 | 5 | 32 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 6.5E-7 | 6 | 33 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 7 | 27 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.78E-10 | 14 | 70 | No hit | No description |
SMART | SM00355 | 8.5E-4 | 33 | 57 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.138 | 33 | 62 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 5.3E-6 | 34 | 57 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 35 | 57 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.62E-13 | 103 | 151 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.8E-14 | 105 | 141 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 14.69 | 118 | 147 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0019 | 118 | 142 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 120 | 142 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 2.3E-11 | 142 | 173 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 8.09E-6 | 142 | 174 | No hit | No description |
PROSITE profile | PS50157 | 9.847 | 148 | 173 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.015 | 148 | 173 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 150 | 173 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence Send to blast |
MDDYPQCETC GARFYYPAKL AEHANVHSGT TPFRCEHDGC EEAFPTRDRL RTHAQKHDAK 60 HECALCGKRF QTAGASRRST RVQRLNDRRV APRVRPSLAS PSRVLRSHAM THTTSRPHAC 120 PHEGCGKAFK TEKAVASHAR THTGEKPYRC TFGACERAFS SQGEFSRHRI KTHGVRLRNA 180 QPAAGVGDVG GGFVGVGVGA DEVLVAGVCE * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2i13_A | 1e-18 | 7 | 169 | 24 | 181 | Aart |
2i13_B | 1e-18 | 7 | 169 | 24 | 181 | Aart |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003062250.1 | 1e-153 | predicted protein | ||||
TrEMBL | C1N290 | 1e-151 | C1N290_MICPC; Predicted protein | ||||
STRING | XP_003062250.1 | 1e-152 | (Micromonas pusilla) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP70 | 6 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04240.1 | 3e-14 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | 51893 |
Entrez Gene | 9687689 |
Publications ? help Back to Top | |||
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