PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information? help Back to Top

TF ID

51158

Common Name

MICPUN_51158

Organism

Taxonomic ID

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas

Family

Protein Properties

Length: 151aa MW: 16330.5 Da PI: 4.4298

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
51158	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	54.2	3.6e-17	4	95	5	96
NF-YB 5 drflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelege 96 + lP + v +++ + lP ++++d ke++ ec efi v+sea++ + +e++ ti ++ ++ al +l f +e++k+ +++ +e ++e 51158 4 EGSLPKSSVYKMISEGLPPGLRMGNDVKEMIVECCNEFIQCVSSEANEISTKENKTTILPEHVVAALESLDFASMIETVKATMNELKEEDKE 95 567999****************************************************************************9999987665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	5.0E-33	3	131	IPR009072	Histone-fold
SuperFamily	SSF47113	2.58E-29	3	129	IPR009072	Histone-fold
Pfam	PF00808	2.2E-14	6	70	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 151 aa Download sequence Send to blast
MDDEGSLPKS SVYKMISEGL PPGLRMGNDV KEMIVECCNE FIQCVSSEAN EISTKENKTT 60 ILPEHVVAAL ESLDFASMIE TVKATMNELK EEDKEVRAEK KKKKGMQISD EEALRLQQEM 120 FAAAKARYNS GDATIGAGQP PAAANTGSLD *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_B	5e-32	2	125	11	133	Transcription Regulator NC2 beta chain
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP001328	0.0	CP001328.1 Micromonas sp. RCC299 chromosome 7, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002504124.1	1e-107	predicted protein
TrEMBL	C1EBH2	1e-105	C1EBH2_MICCC; Uncharacterized protein
STRING	XP_002504124.1	1e-106	(Micromonas sp. RCC299)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP2422	15	15

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23090.4	2e-33	nuclear factor Y, subunit B13

Link Out ? help Back to Top
Phytozome	51158
Entrez Gene	8245064

Publications ? help Back to Top
Worden AZ, et al. Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas. Science, 2009. 324(5924): p. 268-72 [PMID:19359590]