PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 50291
Common NameMICPUCDRAFT_50291
Organism
Micromonas pusilla CCMP1545
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas; Micromonas pusilla
Family GATA
Protein Properties Length: 1646aa    MW: 180907 Da    PI: 4.7828
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
50291genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA31.13.3e-10323359135
   GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
            C+nCg     T+ +R gp+g  +LCnaCG+y++ +g+
  50291 323 CRNCGCLRenTTKMRPGPSGLGSLCNACGMYWATQGR 359
            ******9999**********************99886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577165.7E-8316370No hitNo description
SMARTSM004015.7E-9317370IPR000679Zinc finger, GATA-type
CDDcd002029.91E-11322363No hitNo description
Gene3DG3DSA:3.30.50.108.4E-10322363IPR013088Zinc finger, NHR/GATA-type
PfamPF003201.6E-7323359IPR000679Zinc finger, GATA-type
PROSITE patternPS003440323350IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.10.390.105.4E-4775803IPR010919SAND domain-like
SMARTSM003334.9826886IPR002999Tudor domain
SuperFamilySSF637483.16E-5828871No hitNo description
SuperFamilySSF473702.35E-209611094IPR001487Bromodomain
SMARTSM002975.8E-149671093IPR001487Bromodomain
Gene3DG3DSA:1.20.920.101.9E-229691090IPR001487Bromodomain
CDDcd043691.06E-199741084No hitNo description
PROSITE profilePS5001415.49310011074IPR001487Bromodomain
PfamPF004392.2E-1210051077IPR001487Bromodomain
PRINTSPR005031.2E-510181034IPR001487Bromodomain
PRINTSPR005031.2E-510551074IPR001487Bromodomain
SuperFamilySSF473702.22E-2513641482IPR001487Bromodomain
SMARTSM002979.8E-2513691479IPR001487Bromodomain
Gene3DG3DSA:1.20.920.101.5E-2613701476IPR001487Bromodomain
CDDcd043691.26E-2213741474No hitNo description
PfamPF004395.0E-1413851464IPR001487Bromodomain
PROSITE profilePS5001416.03213901460IPR001487Bromodomain
PROSITE patternPS00633013951452IPR018359Bromodomain, conserved site
SMARTSM003330.04615811640IPR002999Tudor domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005829Cellular Componentcytosol
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1646 aa     Download sequence    Send to blast
MDDDAREPAP TVEVDANPPP DARDEASEPA PPTASDPDGG DEGATATGDD VGDADAPEDD  60
EESESEEESE DDEPDGEEYE RLRQLNIQRN RELMMSLSLN KMADKLKPTE EKKRRGPTPG  120
VPRKKRGQVA PSRGSSRIQR LQEERKHTAW KDVHIEQPIR SHPHCIVELD IVCLGIADPE  180
RTLPDGSLIP AGFFAEGDFM SEPLFAWTDI NGTHRVMWGD SEGEYQRYVE TEDGGAISAG  240
DACVCILREM QRRRLELLGA TSGEGVSEPT GIRIHQAHLP PLKKEGSNPI VKLRTKPYVR  300
KQKAHTKPKG ITKATSGPSE PKCRNCGCLR ENTTKMRPGP SGLGSLCNAC GMYWATQGRL  360
RPAGVMDDDY ERAVPPGQEP AKPLVYKLKT TFENAVSSAP VGAAKGDEHG DDLPISAMKV  420
PVKQESDEED DDEEEEEEDE KEEDNLTAIF EPYTSKPNAF FQNMVKCARA GLVTPAMVGA  480
DDFPEVLEEG APAPRWAAHI YAPYPPMVAV TEEAVYQVKT DPQNSSLAKA AAIVADSEPV  540
IASTVERIND YPAQASYVQR SAAVCFAGYG ALATGTSSPS LFPTTFAMPS MVRPRAYREH  600
DIDGIALFGY TEPDVQLSLR AQLEKYGQKR DAEGEAAEAK ERAADVAEAI AALEHHVSRA  660
RKILTKISAA ADREARNARA VPRLEIAGEA AILCPPLPKA DSGKGAKRVK GDGSNKGGGG  720
DDGEPTGFLY EDVMAELEGP EDIPTPIKVM CGSAPRGEWQ TYGRPREEKI ILSGKGGDAV  780
TPAEYERLGG CGQSKKWRKS IHVVKKDGSE GIAIGDYLAH LGGKKGESIV GRRIGLYWPL  840
DECFYLGTVD EFMPTTGEHT VRYDDGEAED LLLPMQRVKW LNSDVGKAGQ GTLASSEDTL  900
ATTAKDQKTA EEIKSDEALA AVKAWEVEAS AREAKRVEEE AKGILSPEGR TRMTMGAFDI  960
WVMNPAQMRM RNSERRKCFE ILTILRNVAD PDDDPDDEEE PPRLLIEVFE KLPTPRELPE  1020
YYEIIRCPVD CRSIERMLRR PTDRSYASPW LFACAVELML TNAQVYNDEG SQIYEEAGIL  1080
RHAFIAAMRE RFPGQPLPSK FKLYECCDEP VWLRPPKWSA PGVEDVEDEP DPFGPLDWET  1140
AQADDDEERA VARAITAGGA VYGGKSSIWN APSVTRGPGR PKRDVVYVDD EADDDDERYD  1200
PKKRNGGGTR SRGGGGGGGG HKRKSLAGPP LGPAAAAAKA ALDEAGGEPL TLDDLVAAAE  1260
KAKAPEIAGA RRPGSTILSV LRQHPDVFVE SLTGTGSKFS LNPNLDYDDA DDDYYGPSRT  1320
SNRSKSKKRY VEPDEDDFND RFDEEAQANS KRKRGGYRSD EEETYDGLSP TQEAACKTIL  1380
STARALKDRK GRVVAELFEL LPTRKQLPDY YRQIANPIDF QSIAKCFKQR GYKTMWSFLC  1440
AMELMFSNAQ VYNEEHSELW EDANTLRKCV KNTLNKAIPG HPFPEPLSVY DEKLCQDPGW  1500
KPPSSKKPKE GQLKVSFTVG GKSQGGALKL QMNKGKVEMP SFGKCGECET CIGRKGKKCY  1560
DVSMKESAFR NHEGAKVASM GAKAVGTALE ILWPDDETFY PCKVTAYNAR NRSHMVKYDA  1620
DGITEDIQLW EENEEVRLRS SGRRR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3hmf_A1e-131391146826103Protein polybromo-1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1111125KKRRGPTPGVPRKKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003054997.10.0bromodomain-containing protein
TrEMBLC1MHR10.0C1MHR1_MICPC; Bromodomain-containing protein
STRINGXP_003054997.10.0(Micromonas pusilla)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP636355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.16e-08ZIM-like 1
Publications ? help Back to Top
  1. Worden AZ, et al.
    Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.
    Science, 2009. 324(5924): p. 268-72
    [PMID:19359590]